(Q39197388)

English

Identification of activated enhancers and linked transcription factors in breast, prostate, and kidney tumors by tracing enhancer networks using epigenetic traits.

scientific article published on 9 November 2016

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scholarly article

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Europe PubMed Central

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27 March 2020

Identification of activated enhancers and linked transcription factors in breast, prostate, and kidney tumors by tracing enhancer networks using epigenetic traits (English)

1 reference

Europe PubMed Central

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27 March 2020

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27 March 2020

author name string

Yu Guo

2

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27 March 2020

Yu Gyoung Tak

3

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27 March 2020

Lijing Yao

4

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27 March 2020

Hui Shen

5

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27 March 2020

Gerhard A Coetzee

6

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27 March 2020

Peter W Laird

7

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27 March 2020

Peggy J Farnham

8

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27 March 2020

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9 November 2016

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27 March 2020

Epigenetics & Chromatin

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27 March 2020

9

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27 March 2020

50

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27 March 2020

https://scigraph.springernature.com/pub.10.1186/s13072-016-0102-4

0 references

Enhancer methylation dynamics contribute to cancer plasticity and patient mortality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Effects on the transcriptome upon deletion of a distal element cannot be predicted by the size of the H3K27Ac peak in human cells

1 reference

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10 September 2017

The Molecular Taxonomy of Primary Prostate Cancer

1 reference

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10 September 2017

Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements

1 reference

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10 September 2017

The role of HOXC6 in prostate cancer development

1 reference

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10 September 2017

The Transcription Factor ZNF395 Is Required for the Maximal Hypoxic Induction of Proinflammatory Cytokines in U87-MG Cells

1 reference

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10 September 2017

Inferring regulatory element landscapes and transcription factor networks from cancer methylomes

1 reference

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10 September 2017

Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Integrative analysis of 111 reference human epigenomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Identifying and mitigating bias in next-generation sequencing methods for chromatin biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Nucleosome positioning and histone modifications define relationships between regulatory elements and nearby gene expression in breast epithelial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

A high-resolution map of the three-dimensional chromatin interactome in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

The hypoxia-inducible transcription factor ZNF395 is controlled by IĸB kinase-signaling and activates genes involved in the innate immune response and cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

CaMKK2: a novel target for shaping the androgen-regulated tumor ecosystem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

GATA3 acts upstream of FOXA1 in mediating ESR1 binding by shaping enhancer accessibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

GENCODE: the reference human genome annotation for The ENCODE Project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

The accessible chromatin landscape of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

An integrated encyclopedia of DNA elements in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Genomics: ENCODE explained

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Mapping and analysis of chromatin state dynamics in nine human cell types

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

FIMO: scanning for occurrences of a given motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

A unique chromatin signature uncovers early developmental enhancers in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 reference

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10 September 2017

Loss of HOXC6 expression induces apoptosis in prostate cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5103450

10 September 2017

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

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10 September 2017

Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer

1 reference

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14 September 2017

Positive cross-regulatory loop ties GATA-3 to estrogen receptor alpha expression in breast cancer

1 reference

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14 September 2017

Identification of a Candidate Gene Panel for the Early Diagnosis of Prostate Cancer

1 reference

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25 September 2017

RNA sequencing reveals upregulation of RUNX1-RUNX1T1 gene signatures in clear cell renal cell carcinoma

1 reference

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15 June 2018

Prostate cancer metastasis-driving genes: hurdles and potential approaches in their identification

1 reference

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21 August 2018

Identification and characterization of renal cell carcinoma gene markers.

1 reference

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21 August 2018

Biology and clinical relevance of the micropthalmia family of transcription factors in human cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/27833659

12 December 2020

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Screening for Prostate Cancer

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https://pubmed.ncbi.nlm.nih.gov/27833659

12 December 2020

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Identifiers

10.1186/S13072-016-0102-4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27833659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

Dimensions Publication ID

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/s13072-016-0102-4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27833659%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

Europe PubMed Central

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27 March 2020

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