(Q39374018)

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Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis

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Europe PubMed Central

PMC publication ID

11 September 2017

Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis (English)

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Europe PubMed Central

PMC publication ID

11 September 2017

Escherichia coli

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author name string

Kai Zhao

1

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Europe PubMed Central

PMC publication ID

11 September 2017

Mingzhu Liu

2

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Europe PubMed Central

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11 September 2017

Richard R Burgess

3

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Europe PubMed Central

PMC publication ID

11 September 2017

language of work or name

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publication date

6 December 2009

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Europe PubMed Central

PMC publication ID

11 September 2017

Nucleic Acids Research

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Europe PubMed Central

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11 September 2017

38

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Europe PubMed Central

PMC publication ID

11 September 2017

4

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Europe PubMed Central

PMC publication ID

11 September 2017

1273-1283

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Europe PubMed Central

PMC publication ID

11 September 2017

describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2831329/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Sigma factors in Pseudomonas aeruginosa

1 reference

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11 September 2017

Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo

1 reference

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1 reference

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1 reference

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11 September 2017

Systematic mutagenesis of the Escherichia coli genome

1 reference

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11 September 2017

Predicting bacterial transcription units using sequence and expression data

1 reference

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1 reference

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11 September 2017

Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales

1 reference

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11 September 2017

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1 reference

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11 September 2017

LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli.

1 reference

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11 September 2017

High-density microarray of small-subunit ribosomal DNA probes

1 reference

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11 September 2017

Roles of rpoN, fliA, and flgR in expression of flagella in Campylobacter jejuni

1 reference

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11 September 2017

Structural mechanism for rifampicin inhibition of bacterial rna polymerase

1 reference

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BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

1 reference

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The hook gene (flgE) is expressed from the flgBCDEF operon in Rhodobacter sphaeroides: study of an flgE mutant

1 reference

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11 September 2017

Functional modulation of Escherichia coli RNA polymerase

1 reference

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11 September 2017

The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

1 reference

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11 September 2017

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

1 reference

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11 September 2017

The bacterial enhancer-binding protein NtrC as a molecular machine

1 reference

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11 September 2017

Methods and statistics for combining motif match scores

1 reference

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A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner

1 reference

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11 September 2017

The complete genome sequence of Escherichia coli K-12

1 reference

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Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions

1 reference

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11 September 2017

Glutamate at the site of phosphorylation of nitrogen-regulatory protein NTRC mimics aspartyl-phosphate and activates the protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay.

1 reference

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11 September 2017

The sigma factors of Bacillus subtilis

1 reference

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11 September 2017

Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of sigma 70 and sigma 38

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Cloning and phenotypic characterization of fleS and fleR, new response regulators of Pseudomonas aeruginosa which regulate motility and adhesion to mucin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Culture medium for enterobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Transcriptional control of flagellar genes in Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Formation of pilin in Pseudomonas aeruginosa requires the alternative sigma factor (RpoN) of RNA polymerase

1 reference

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11 September 2017

Sequence logos: a new way to display consensus sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Specific binding of the transcription factor sigma-54 to promoter DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

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Isolation and characterization of a polyol-responsive monoclonal antibody useful for gentle purification of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

sigma(54) Promoters control expression of genes encoding the hook and basal body complex in Rhodobacter sphaeroides

1 reference

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11 September 2017

Motility of Helicobacter pylori is coordinately regulated by the transcriptional activator FlgR, an NtrC homolog

1 reference

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The flagellar switch genes fliM and fliN of Rhodobacter sphaeroides are contained in a large flagellar gene cluster

1 reference

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14 September 2017

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

1 reference

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Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR.

1 reference

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1 reference

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Regulation of the heat-shock response in bacteria

1 reference

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Transcriptional analysis of the flagellar regulon of Salmonella typhimurium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

14 September 2017

On the mechanism of rifampicin inhibition of RNA synthesis

1 reference

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Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E. coli

1 reference

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17 June 2018

Eubacterial sigma-factors

1 reference

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17 June 2018

Differential regulation of multiple overlapping promoters in flagellar class II operons in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

17 June 2018

Factor Stimulating Transcription by RNA Polymerase

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17 June 2018

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1 reference

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1 reference

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21 August 2018

Extensive functional overlap between sigma factors in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

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1 reference

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Expression, purification of, and monoclonal antibodies to sigma factors from Escherichia coli.

1 reference

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21 August 2018

The sigma54 regulon (sigmulon) of Pseudomonas putida

1 reference

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21 August 2018

Nucleotide-dependent triggering of RNA polymerase-DNA interactions by an AAA regulator of transcription

1 reference

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21 August 2018

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1 reference

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21 August 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Core RNA polymerase assists binding of the transcription factor sigma 54 to promoter DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sigma factors of Mycobacterium tuberculosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of potential sigma(N)-dependent promoters in bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription of the ibpB heat-shock gene is under control of sigma(32)- and sigma(54)-promoters, a third regulon of heat-shock response

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

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based on heuristic

inferred from PubMed ID database lookup

A fast Western blot procedure improved for quantitative analysis by direct fluorescence labeling of primary antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKP1123

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

release_mmzjwwb5ezevtpiinnt2i4ip2i

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https://api.fatcat.wiki/v0/release/mmzjwwb5ezevtpiinnt2i4ip2i

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 September 2017

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