(Q39459477)

12 September 2017

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites (English)

1 reference

12 September 2017

Anderson JD

1

1 reference

PMCID

87046

12 September 2017

Widom J

series ordinal

2

1 reference

PMCID

87046

12 September 2017

language of work or name

English

0 references

publication date

1 June 2001

1 reference

Molecular and Cellular Biology

12 September 2017

1 reference

12 September 2017

21

1 reference

12 September 2017

3830-3839

1 reference

12 September 2017

11

1 reference

Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Promoter targeting and chromatin remodeling by the SWI/SNF complex

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Guilt by association: non-coding RNAs, chromosome-specific proteins and dosage compensation in Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

ATP-dependent remodeling and acetylation as regulators of chromatin fluidity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Nucleosome mobilization catalysed by the yeast SWI/SNF complex

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Oligoadenosine tracts favor nucleosome formation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Nucleosome packaging and nucleosome positioning of genomic DNA

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Assessments of DNA inhomogeneities in yeast chromosome III.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Twist constraints on linker DNA in the 30-nm chromatin fiber: implications for nucleosome phasing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Structural features of a phased nucleosome core particle

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

The structure of an oligo(dA).oligo(dT) tract and its biological implications

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Poly(dA).poly(dT) rich sequences are not sufficient to exclude nucleosome formation in a constitutive yeast promoter

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Sequence-dependent DNA structure: tetranucleotide conformational maps

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Isolated oligopurine tracts do not significantly affect the binding of DNA to nucleosomes

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

TGGA repeats impair nucleosome formation.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Nucleosome mobility and the maintenance of nucleosome positioning

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=87046

Reversible oligonucleosome self-association: dependence on divalent cations and core histone tail domains

21 August 2018

1 reference

12 December 2020

A specialized nucleosome modulates transcription factor access to a C. glabrata metal responsive promoter

1 reference

12 December 2020

Characterization of nucleosome core particles containing histone proteins made in bacteria

1 reference

12 December 2020

Coupled-enzymatic assays for the rate and mechanism of DNA site exposure in a nucleosome

1 reference

12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

12 December 2020

Restriction enzymes as probes of nucleosome stability and dynamics

1 reference

12 December 2020

Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites

1 reference

12 December 2020

Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes

1 reference

12 December 2020

Effects of histone acetylation on the equilibrium accessibility of nucleosomal DNA target sites

1 reference

12 December 2020

Distinguishing between mechanisms of eukaryotic transcriptional activation with bacteriophage T7 RNA polymerase

1 reference

12 December 2020

The histone core exerts a dominant constraint on the structure of DNA in a nucleosome

1 reference

12 December 2020

Lifetime of the histone octamer studied by continuous-flow quasielastic light scattering: test of a model for nucleosome transcription

1 reference

12 December 2020

Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

1 reference

12 December 2020

10.1128/MCB.21.11.3830-3839.2001

Identifiers

DOI

1 reference

12 September 2017

1 reference

12 September 2017

1 reference

PMCID

87046