(Q39516111)

12 September 2017

Selected base sequence outside the target binding site of zinc finger protein Sp1. (English)

1 reference

12 September 2017

M Nagaoka

1

1 reference

12 September 2017

Y Shiraishi

series ordinal

2

1 reference

12 September 2017

Y Sugiura

series ordinal

3

1 reference

12 September 2017

language of work or name

English

0 references

publication date

1 December 2001

1 reference

12 September 2017

Nucleic Acids Research

1 reference

12 September 2017

29

1 reference

12 September 2017

24

1 reference

12 September 2017

4920-4929

1 reference

describes a project that uses

12 September 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC97581/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Getting a handhold on DNA: design of poly-zinc finger proteins with femtomolar dissociation constants.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Design of polydactyl zinc-finger proteins for unique addressing within complex genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Selection of protein binding sites from random nucleic acid sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

In vitro selection of zinc fingers with altered DNA-binding specificity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

DNA-binding specificity of NGFI-A and related zinc finger transcription factors

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Quantitative DNase footprint titration: a method for studying protein-DNA interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

DNA sequence of the region in the genome of herpes simplex virus type 1 containing the genes for DNA polymerase and the major DNA binding protein.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

DNA conformation and protein binding

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Nuclease activity of 1,10-phenanthroline-copper in study of protein-DNA interactions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Artificial nine zinc-finger peptide with 30 base pair binding sites

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

The gene for polypeptide IX of adenovirus type 2 and its unspliced messenger RNA.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Multiple specific contacts between a mammalian transcription factor and its cognate promoters

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Nuclease activity of 1,10-phenanthroline-copper ion. Conformational analysis and footprinting of the lac operon.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Activation of the AIDS retrovirus promoter by the cellular transcription factor, Sp1.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Different activation domains of Sp1 govern formation of multimers and mediate transcriptional synergism

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

18 DNA contacts probed by modification protection and interference studies

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Hydroxyl radical footprinting: a high-resolution method for mapping protein-DNA contacts

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=97581

Binding of transcription factor Sp1 to GC box DNA revealed by footprinting analysis: different contact of three zinc fingers and sequence recognition mode

17 June 2018

1 reference

12 December 2020

Cooperative bending of the 21-base-pair repeats of the SV40 viral early promoter by human Sp1

1 reference

12 December 2020

Distinct phosphate backbone contacts revealed by some mutant peptides of zinc finger protein Spl: effect of protein-induced bending on DNA recognition

1 reference

12 December 2020

Unique DNA binding mode of the N-terminal zinc finger of transcription factor Sp1

1 reference

12 December 2020

Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/29.24.4920

1 reference

12 September 2017

1 reference

12 September 2017

PubMed publication ID

11812820

1 reference