(Q39576348)

English

Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: implications for posttranscriptional silencing of homologous host genes in plants

scientific article published on November 1998

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scholarly article

1 reference

Europe PubMed Central

13 September 2017

Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: implications for posttranscriptional silencing of homologous host genes in plants (English)

1 reference

Europe PubMed Central

13 September 2017

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author name string

Stam M

1

1 reference

Europe PubMed Central

13 September 2017

Viterbo A

2

1 reference

Europe PubMed Central

13 September 2017

Mol JN

3

1 reference

Europe PubMed Central

13 September 2017

Kooter JM

4

1 reference

Europe PubMed Central

13 September 2017

language of work or name

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publication date

1 November 1998

1 reference

Europe PubMed Central

13 September 2017

Molecular and Cellular Biology

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Europe PubMed Central

13 September 2017

18

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Europe PubMed Central

13 September 2017

11

1 reference

Europe PubMed Central

13 September 2017

6165-6177

1 reference

Europe PubMed Central

13 September 2017

describes a project that uses

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC109204/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

HOMOLOGY-DEPENDENT GENE SILENCING IN PLANTS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Introduction of a Chimeric Chalcone Synthase Gene into Petunia Results in Reversible Co-Suppression of Homologous Genes in trans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Induction of a Highly Specific Antiviral State in Transgenic Plants: Implications for Regulation of Gene Expression and Virus Resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

DNA methylation inhibits elongation but not initiation of transcription in Neurospora crassa.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

RIGS (repeat-induced gene silencing) in Arabidopsis is transcriptional and alters chromatin configuration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Variegated transgene expression in mouse mammary gland is determined by the transgene integration locus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Methylation of DNA repeats of decreasing sizes in Ascobolus immersus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Instability of long inverted repeats within mouse transgenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Organization of paramutagenicity in R-stippled maize

1 reference

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14 September 2017

Molecular organization and germinal instability of R-stippled maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Methylation induced premeiotically in Ascobolus: coextension with DNA repeat lengths and effect on transcript elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Inverted DNA repeats: a source of eukaryotic genomic instability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

RNA-directed de novo methylation of genomic sequences in plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Posttranscriptional silencing of reporter transgenes in tobacco correlates with DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Methylation of slipped duplexes, snapbacks and cruciforms by human DNA(cytosine-5)methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Hairpins are formed by the single DNA strands of the fragile X triplet repeats: structure and biological implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Effect of anti-cruciform DNA monoclonal antibodies on DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Initiation of rolling-circle replication in pT181 plasmid: initiator protein enhances cruciform extrusion at the origin

1 reference

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14 September 2017

Epigene conversion: a proposal with implications for gene mapping in humans

1 reference

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14 September 2017

Silencers, silencing, and heritable transcriptional states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Suppression of beta-1,3-glucanase transgene expression in homozygous plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Hypermethylation of telomere-like foldbacks at codon 12 of the human c-Ha-ras gene and the trinucleotide repeat of the FMR-1 gene of fragile X.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Transgenes and gene suppression: telling us something new?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

DNA methylation associated with repeat-induced point mutation in Neurospora crassa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Gametic imprinting in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

MIP: an epigenetic gene silencing process in Ascobolus immersus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Genetic and epigenetic inactivation of repetitive sequences in Neurospora crassa: RIP, DNA methylation, and quelling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Gene silencing in transgenic plants: a heuristic autoregulation model.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

14 September 2017

Reversible methylation and inactivation of marker genes in sequentially transformed tobacco plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

Gene inactivation triggered by recognition between DNA repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

The reduced expression of endogenous duplications (REED) in the maize R gene family is mediated by DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

X chromosome inactivation, XIST, and pursuit of the X-inactivation center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

The Polycomb and trithorax group proteins of Drosophila: trans-regulators of homeotic gene function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

Repeat-induced gene silencing: common mechanisms in plants and fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

Variegated gene expression in mice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

Repetitive Alu elements form a cruciform structure that regulates the function of the human CD8 alpha T cell-specific enhancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

25 September 2017

Do transgene arrays form heterochromatin in vertebrates?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

Epigenetic control of an endogenous gene family is revealed by a novel blue fluorescent mutant of Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

Epigenetic repeat-induced gene silencing (RIGS) in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

Transgenic plant virus resistance mediated by untranslatable sense RNAs: expression, regulation, and fate of nonessential RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

The two-dimensional restriction analysis of Drosophila DNAs: males and females

1 reference

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15 June 2018

Improved binary vectors for Agrobacterium-mediated plant transformation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

DNA cruciforms and the nuclear supporting structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

Promoter methylation and progressive transgene inactivation in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

15 June 2018

Suppression of Virus Accumulation in Transgenic Plants Exhibiting Silencing of Nuclear Genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

RNA-Mediated Virus Resistance: Role of Repeated Transgenes and Delineation of Targeted Regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

A Transcriptionally Active State Is Required for Post-Transcriptional Silencing (Cosuppression) of Nitrate Reductase Host Genes and Transgenes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

The Frequency and Degree of Cosuppression by Sense Chalcone Synthase Transgenes Are Dependent on Transgene Promoter Strength and Are Reduced by Premature Nonsense Codons in the Transgene Coding Sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

Repeat-induced gene silencing in mammals.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

RNA-mediated RNA degradation and chalcone synthase A silencing in petunia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

Chalcone synthase cosuppression phenotypes in petunia flowers: comparison of sense vs. antisense constructs and single-copy vs. complex T-DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

Genetic and biochemical dissection of transgenic RNA-mediated virus resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

Susceptibility of transgene loci to homology-dependent gene silencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

Post-transcriptional cosuppression of beta-1,3-glucanase genes does not affect accumulation of transgene nuclear mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=109204

21 August 2018

Genetics of homology-dependent gene silencing in Arabidopsis; a role for methylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differences in DNA-methylation are associated with a paramutation phenomenon in transgenic petunia

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Homology-dependent gene silencing in transgenic plants: epistatic silencing loci contain multiple copies of methylated transgenes

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interchromosomal Transfer of Epigenetic States in Ascobolus: Transfer of DNA Methylation Is Mechanistically Related to Homologous Recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How and Why Do Plants Inactivate Homologous (Trans)genes?

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transgene copy number can be positively or negatively associated with transgene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular and genetic analysis of nitrite reductase co-suppression in transgenic tobacco plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-strand and double-strand cleavage at half-modified and fully modified recognition sites for the restriction nucleases Sau3a and Taqi

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene silencing mediated by promoter homology occurs at the level of transcription and results in meiotically heritable alterations in methylation and gene activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA-directed RNA polymerase from tomato leaves. II. Catalytic in vitro properties

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Duplications That Suppress and Deletions That Restore Expression from a Chalcone Synthase Multigene Family

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of Pigment Biosynthesis Genes during Petal Development

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Post-transcriptional gene silencing in plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/9774634

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MCB.18.11.6165

1 reference

Europe PubMed Central

13 September 2017

1 reference

Europe PubMed Central

13 September 2017

1 reference

Europe PubMed Central

13 September 2017

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