(Q39584318)

13 September 2017

Structure and dynamics of three-way DNA junctions: atomic force microscopy studies (English)

1 reference

13 September 2017

L S Shlyakhtenko

1

1 reference

13 September 2017

V N Potaman

2

1 reference

13 September 2017

R R Sinden

3

1 reference

13 September 2017

A A Gall

4

1 reference

13 September 2017

Y L Lyubchenko

5

1 reference

13 September 2017

language of work or name

English

0 references

publication date

1 September 2000

1 reference

13 September 2017

Nucleic Acids Research

1 reference

13 September 2017

28

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13 September 2017

18

1 reference

13 September 2017

3472-3477

1 reference

Interaction of three-way DNA junctions with steroids.

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Crystal structure of a DNA Holliday junction

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

DNA-directed mutations. Leading and lagging strand specificity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Atomic force microscopy: a powerful tool to observe biomolecules at work

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Atomic force microscopic demonstration of DNA looping by GalR and HU.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Visualization of supercoiled DNA with atomic force microscopy in situ

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

NMR studies of DNA three-way junctions containing two unpaired thymidine bases: the influence of the sequence at the junction on the stability of the stacking conformers

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

CA runs increase DNA flexibility in the complex of lambda Cro protein with the OR3 site

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Structural features of a three-stranded DNA junction containing a C-C junctional bulge

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Helical stacking in DNA three-way junctions containing two unpaired pyrimidines: proton NMR studies

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Three-arm nucleic acid junctions are flexible

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

DNA bending induced by Cro protein binding as demonstrated by gel electrophoresis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Construction of three-dimensional stick figures from branched DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Salt-dependent DNA superhelix diameter studied by small angle neutron scattering measurements and Monte Carlo simulations

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Stability and structure of three-way DNA junctions containing unpaired nucleotides

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Cruciform cutting endonucleases from Saccharomyces cerevisiae and phage T4 show conserved reactions with branched DNAs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

The three-way DNA junction is a Y-shaped molecule in which there is no helix-helix stacking

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Structural studies of DNA three-way junctions.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Asymmetric structure of a three-arm DNA junction

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Symmetrical adenovirus minichromosomes have hairpin replication intermediates

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Structure and dynamics of supercoil-stabilized DNA cruciforms.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Excess counterion binding and ionic stability of kinked and branched DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Escherichia coli RNA polymerase activity observed using atomic force microscopy

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Conformational flexibility of three-way DNA junctions containing unpaired nucleotides.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110733

Structure of branched DNA molecules: gel retardation and atomic force microscopy studies

21 August 2018

1 reference

12 December 2020

Atomic force microscopy imaging of double stranded DNA and RNA

1 reference

12 December 2020

Model for the interaction of DNA junctions and resolving enzymes

1 reference

12 December 2020

Effect of sequence on the structure of three-arm DNA junctions

1 reference

12 December 2020

DNase I cleavage of branched DNA molecules

1 reference

12 December 2020

Excess counterion accumulation around branched nucleic acids

1 reference

12 December 2020

Structure of three-way DNA junctions. 2. Effects of extra bases and mismatches

1 reference

12 December 2020

Structure of three-way DNA junctions. 1. Non-planar DNA geometry

1 reference

12 December 2020

Conformation and thermodynamics of DNA "necks". Models for three-arm branch formation in a duplex

1 reference

12 December 2020

Alternative structures in duplex DNA formed within the trinucleotide repeats of the myotonic dystrophy and fragile X loci

1 reference

12 December 2020

Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis

1 reference

12 December 2020

Effect of additional unpaired bases on the stability of three-way DNA junctions studied by fluorescence techniques

1 reference

12 December 2020

Superhelix organization by DNA curvature as measured through site-specific labeling

1 reference

12 December 2020

Hairpin induced slippage and hyper-methylation of the fragile X DNA triplets

1 reference

12 December 2020

Atomic force microscopy of DNA, nucleoproteins and cellular complexes: the use of functionalized substrates

1 reference

12 December 2020

Trinucleotide repeat DNA structures: dynamic mutations from dynamic DNA

1 reference

12 December 2020

Small slipped register genetic instabilities in Escherichia coli in triplet repeat sequences associated with hereditary neurological diseases

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/28.18.3472

1 reference

13 September 2017

1 reference

13 September 2017

PubMed publication ID

10982865

1 reference