(Q39639584)

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Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

scientific article published on 9 May 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions (English)

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

0 references

1

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

2

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

publication date

9 May 2008

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

Protein Science

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Europe PubMed Central

PMC publication ID

13 September 2017

17

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Europe PubMed Central

PMC publication ID

13 September 2017

7

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

1212-1219

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

Nonbonded terms extrapolated from nonlocal knowledge-based energy functions improve error detection in near-native protein structure models.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Near-native structure refinement using in vacuo energy minimization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

A free-rotating and self-avoiding chain model for deriving statistical potentials based on protein structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Statistical potential for assessment and prediction of protein structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

A composite score for predicting errors in protein structure models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Toward high-resolution de novo structure prediction for small proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Automated structure prediction of weakly homologous proteins on a genomic scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Statistical potentials for fold assessment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Protein structure prediction and structural genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Selection for improved subtiligases by phage display

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Selection of representative protein data sets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Structural refinement of protein segments containing secondary structure elements: Local sampling, knowledge-based potentials, and clustering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

14 September 2017

Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

25 September 2017

Subdomain interactions as a determinant in the folding and stability of T4 lysozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

15 June 2018

Specific interactions for ab initio folding of protein terminal regions with secondary structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

21 August 2018

A tale of two tails: why are terminal residues of proteins exposed?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442011

21 August 2018

An all atom force field for simulations of proteins and nucleic acids

1 reference

https://pubmed.ncbi.nlm.nih.gov/18469178

12 December 2020

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Identifiers

10.1110/PS.033480.107

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 September 2017

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