(Q39641659)

13 September 2017

title

Analysis of the synonymous codon usage bias in recently emerged enterovirus D68 strains (English)

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13 September 2017

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1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27364082%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Uladzimir U Karniychuk

series ordinal

1

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13 September 2017

publication date

27 June 2016

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13 September 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27364082%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

223

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27364082%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

73-79

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27364082%20AND%20SRC:MED&resulttype=core&format=json

Pathogen recognition and innate immunity

9 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis A virus capsid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Codon and amino acid usage in retroviral genomes is consistent with virus-specific nucleotide pressure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

DNA methylation and the frequency of CpG in animal DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Hepatitis A virus adaptation to cellular shutoff is driven by dynamic adjustments of codon usage and results in the selection of populations with altered capsids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Genome-wide analysis of codon usage bias in Ebolavirus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

A detailed comparative analysis on the overall codon usage patterns in hepatitis A virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Characterization of enterovirus activity, including that of enterovirus D68, in pediatric patients in Alberta, Canada, in 2014.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Enterovirus D68: a clinically important respiratory enterovirus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Pandemic influenza A virus codon usage revisited: biases, adaptation and implications for vaccine strain development

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Codon catalog usage and the genome hypothesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Patterns of evolution and host gene mimicry in influenza and other RNA viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Global reemergence of enterovirus D68 as an important pathogen for acute respiratory infections

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

The extent of codon usage bias in human RNA viruses and its evolutionary origin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of synonymous codon usage in the VP2 protein gene of infectious bursal disease virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

System analysis of synonymous codon usage biases in archaeal virus genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of synonymous codon usage bias in 09H1N1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Contextual constraints on synonymous codon choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Patterns and influencing factor of synonymous codon usage in porcine circovirus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Overall codon usage pattern of enterovirus 71.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Continued seasonal circulation of enterovirus D68 in the Netherlands, 2011-2014.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Molecular basis of fidelity of DNA synthesis and nucleotide specificity of retroviral reverse transcriptases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

A cluster of acute flaccid paralysis and cranial nerve dysfunction temporally associated with an outbreak of enterovirus D68 in children in Colorado, USA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Codon usage tabulated from international DNA sequence databases: status for the year 2000

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Nucleotide sequences of the trpG regions of Escherichia coli, Shigella dysenteriae, Salmonella typhimurium and Serratia marcescens.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Variation partitioning of species data matrices: estimation and comparison of fractions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Codon usage and replicative strategies of hepatitis A virus.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Hepatitis A virus evolution and the potential emergence of new variants escaping the presently available vaccines.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Dinucleotide and stop codon frequencies in single-stranded RNA viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Genus specific evolution of codon usage and nucleotide compositional traits of poxviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Genome variability and capsid structural constraints of hepatitis a virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Evolutionary Basis of Codon Usage and Nucleotide Composition Bias in Vertebrate DNA Viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

An evolutionary perspective on synonymous codon usage in unicellular organisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Forces that influence the evolution of codon bias

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Selective pressure dominates the synonymous codon usage in parvoviridae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

SSE: a nucleotide and amino acid sequence analysis platform

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

CpG RNA: identification of novel single-stranded RNA that stimulates human CD14+CD11c+ monocytes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Signal transduction pathways mediated by the interaction of CpG DNA with Toll-like receptor 9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of synonymous codon usage in classical swine fever virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Bioinformatics analysis of rabbit haemorrhagic disease virus genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Worldwide emergence of multiple clades of enterovirus 68.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

HIV-1 modulates the tRNA pool to improve translation efficiency

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of codon usage in Newcastle disease virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

The 'effective number of codons' used in a gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of codon usage and nucleotide composition bias in polioviruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of synonymous codon usage in enterovirus 71

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Comparative [corrected] codon usage between the three main viruses in pestivirus genus and their natural susceptible livestock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Analysis of base and codon usage by rubella virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

A comparative analysis on the synonymous codon usage pattern in viral functional genes and their translational initiation region of ASFV.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2016.06.015

10.1016/J.VIRUSRES.2016.06.015

7 January 2021

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27364082%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

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