(Q39673618)

English

Is there a twelfth protein-coding gene in the genome of influenza A? A selection-based approach to the detection of overlapping genes in closely related sequences

scientific article published on 21 December 2011

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

Is there a twelfth protein-coding gene in the genome of influenza A? A selection-based approach to the detection of overlapping genes in closely related sequences (English)

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

author name string

Niv Sabath

1

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

Jeffrey S Morris

2

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

Dan Graur

3

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

publication date

21 December 2011

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

73

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

5-6

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

305-315

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Complete nucleotide sequence of the influenza A/PR/8/34 virus NS gene and comparison with the NS genes of the A/Udorn/72 and A/FPV/Rostock/34 strains

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

The influenza virus resource at the National Center for Biotechnology Information

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

H5N1 influenza virus evolution: a comparison of different epidemics in birds and humans (1997-2004).

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

A novel influenza A virus mitochondrial protein that induces cell death.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

A first look at ARFome: dual-coding genes in mammalian genomes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

An overlapping essential gene in the Potyviridae

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Evidence for a novel gene associated with human influenza A viruses

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Comparative annotation of viral genomes with non-conserved gene structure

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Investigating selection on viruses: a statistical alignment approach

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Frequent toggling between alternative amino acids is driven by selection in HIV-1

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Bioinformatic analysis suggests that the Orbivirus VP6 cistron encodes an overlapping gene

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Bioinformatic analysis suggests that a conserved ORF in the waikaviruses encodes an overlapping gene

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Bioinformatic analysis suggests that the Cypovirus 1 major core protein cistron harbours an overlapping gene

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Analysis of the coding potential of the partially overlapping 3' ORF in segment 5 of the plant fijiviruses

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Detecting overlapping coding sequences with pairwise alignments.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Detecting overlapping coding sequences in virus genomes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Bioinformatic evidence for a stem-loop structure 5'-adjacent to the IGR-IRES and for an overlapping gene in the bee paralysis dicistroviruses

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Long term trends in the evolution of H(3) HA1 human influenza type A

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Comment on "Large-scale sequence analysis of avian influenza isolates".

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Simultaneous positive and purifying selection on overlapping reading frames of the tat and vpr genes of simian immunodeficiency virus.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Origins of genes: "big bang" or continuous creation?

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Stability and evolution of overlapping genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

In search of antisense

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

A genome-wide study of dual coding regions in human alternatively spliced genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Using hidden Markov models and observed evolution to annotate viral genomes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Annotation of selection strengths in viral genomes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Evolution of overlapping genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Functionality of unspliced XBP1 is required to explain evolution of overlapping reading frames

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Oscillating evolution of a mammalian locus with overlapping reading frames: an XLalphas/ALEX relay

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Large-scale sequence analysis of avian influenza isolates.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Pattern of nucleotide substitution in the overlapping nonstructural genes of influenza A virus and implication for the genetic diversity of the H5N1 subtype

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

A dependent-rates model and an MCMC-based methodology for the maximum-likelihood analysis of sequences with overlapping reading frames.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Bioinformatics prediction of overlapping frameshifted translation products in mammalian transcripts

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Purifying and directional selection in overlapping prokaryotic genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Detection of functional overlapping genes: simulation and case studies

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Same-strand overlapping genes in bacteria: compositional determinants of phase bias.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

A method for the simultaneous estimation of selection intensities in overlapping genes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

A potentially novel overlapping gene in the genomes of Israeli acute paralysis virus and its relatives

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

The majority of long non-stop reading frames on the antisense strand can be explained by biased codon usage.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Natural selection on the influenza virus genome

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Rapid asymmetric evolution of a dual-coding tumor suppressor INK4a/ARF locus contradicts its function

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Genome sequence determinations and analyses of novel circoviruses from goose and pigeon

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

The Contribution of the PB1-F2 Protein to the Fitness of Influenza A Viruses and its Recent Evolution in the 2009 Influenza A (H1N1) Pandemic Virus.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

No rosetta stone for a sense-antisense origin of aminoacyl tRNA synthetase classes

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Length of the ORF, position of the first AUG and the Kozak motif are important factors in potential dual-coding transcripts.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Segment NS of influenza A virus contains an additional gene NSP in positive-sense orientation

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

Genome-wide characterization of a viral cytotoxic T lymphocyte epitope repertoire.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-011-9477-9

21 January 2018

A codon-based model of nucleotide substitution for protein-coding DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of the Zfx and Zfy genes: rates and interdependence between the genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method for detecting positive selection at single amino acid sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Overlapping genes and information theory

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A maximum-likelihood approach to analyzing nonoverlapping and overlapping reading frames

1 reference

https://pubmed.ncbi.nlm.nih.gov/22187135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-011-9477-9

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

13 September 2017

ResearchGate publication ID

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