(Q39698178)

English

Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

author name string

Michaela Angermayr

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Ulrich Oechsner

2

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Kerstin Gregor

3

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Gary P Schroth

4

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Wolfhard Bandlow

5

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

language of work or name

0 references

publication date

1 October 2002

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

30

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

19

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

4199-4207

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Competition of spontaneous protein folding and mitochondrial import causes dual subcellular location of major adenylate kinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

The type of basal promoter determines the regulated or constitutive mode of transcription in the common control region of the yeast gene pair GCY1/RIO1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Transcription factor access to chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Crystal structure of a yeast TBP/TATA-box complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Facilitated binding of TATA-binding protein to nucleosomal DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

DNA bending at adenine . thymine tracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Saturation mutagenesis of a yeast his3 "TATA element": genetic evidence for a specific TATA-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Yeast adenylate kinase is active simultaneously in mitochondria and cytoplasm and is required for non-fermentative growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Functional distinctions between yeast TATA elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Role of trans-activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

DNA looping in cellular repression of transcription of the galactose operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Intrinsically bent DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Transcription factor TFIID induces DNA bending upon binding to the TATA element.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Chromatin as an essential part of the transcriptional mechanim

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Alteration of the curved helical structure located in the upstream region of the beta-lactamase promoter of plasmid pUC19 and its effect on transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Improved method for high efficiency transformation of intact yeast cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Nucleosome loss activates CUP1 and HIS3 promoters to fully induced levels in the yeast Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Artificial nucleosome positioning sequences tested in yeast minichromosomes: a strong rotational setting is not sufficient to position nucleosomes in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Promoters responsive to DNA bending: a common theme in prokaryotic gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Nucleosomes will not form on double-stranded RNa or over poly(dA).poly(dT) tracts in recombinant DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Analysis of DNA curvature using circular permutation of 5' end labelled fragments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

A comparison of the DNA bending activities of the DNA binding proteins CRP and TFIID.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

14 September 2017

Multiple functions of nucleosomes and regulatory factors in transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

25 September 2017

Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

25 September 2017

The general regulatory factor Reb1p controls basal, but not Gal4p-mediated, transcription of the GCY1 gene in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

15 June 2018

Random cloning of bent DNA segments from Saccharomyces cerevisiae and primary characterization of their structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

15 June 2018

Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

15 June 2018

Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

15 June 2018

pYLZ vectors: Saccharomyces cerevisiae/Escherichia coli shuttle plasmids to analyze yeast promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

15 June 2018

Upstream curved sequences influence the initiation of transcription at the Escherichia coli galactose operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

15 June 2018

GAL4 disrupts a repressing nucleosome during activation of GAL1 transcription in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

20 August 2018

Nucleosome disruption by transcription factor binding in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

20 August 2018

Translational positioning of nucleosomes on DNA: the role of sequence-dependent isotropic DNA bending stiffness.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140550

20 August 2018

Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA bending is an important component of site-specific recognition by the TATA binding protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Organization of the Saccharomyces cerevisiae actin gene UAS: functional significance of reiterated REB1 binding sites and AT-rich elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping of nucleosome positions

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA bend direction by phase sensitive detection

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assembly of the mitochondrial membrane system. Analysis of structural mutants of the yeast coenzyme QH2-cytochrome c reductase complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yeast adenylate kinase is transcribed constitutively from a promoter in the short intergenic region to the histone H2A-1 gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural features of a regulatory nucleosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/12364598

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKF551

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

ResearchGate publication ID

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