(Q39724689)

English

Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT.

scientific article published on August 1998

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scholarly article

1 reference

Europe PubMed Central

14 September 2017

Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT. (English)

1 reference

Europe PubMed Central

14 September 2017

author name string

Y Jing

1

1 reference

Europe PubMed Central

14 September 2017

J F Kao

2

1 reference

Europe PubMed Central

14 September 2017

J S Taylor

3

1 reference

Europe PubMed Central

14 September 2017

language of work or name

0 references

publication date

1 August 1998

1 reference

Europe PubMed Central

14 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

14 September 2017

26

1 reference

Europe PubMed Central

14 September 2017

3845-3853

1 reference

Europe PubMed Central

14 September 2017

16

1 reference

Europe PubMed Central

14 September 2017

Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4)photolyase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Recognition and repair of compound DNA lesions (base damage and mismatch) by human mismatch repair and excision repair systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Similarity among the Drosophila (6-4)photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Effect of sequence, adduct type, and opposing lesions on the binding and repair of ultraviolet photodamage by DNA photolyase and (A)BC excinuclease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

The frequency and accuracy of replication past a thymine-thymine cyclobutane dimer are very different in Saccharomyces cerevisiae and Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Repair by human cell extracts of single (6-4) and cyclobutane thymine-thymine photoproducts in DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Crystal structure of DNA photolyase from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Solution-state structure of the Dewar pyrimidinone photoproduct of thymidylyl-(3'----5')-thymidine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Frequency and spectrum of mutations produced by a single cis-syn thymine-thymine cyclobutane dimer in a single-stranded vector

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Absorption mode two-dimensional NOE spectroscopy of exchangeable protons in oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

The effect of Escherichia coli Uvr protein binding on the topology of supercoiled DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Influence of abasic and anucleosidic sites on the stability, conformation, and melting behavior of a DNA duplex: correlations of thermodynamic and structural data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

SOS-dependent replication past a single trans-syn T-T cyclobutane dimer gives a different mutation spectrum and increased error rate compared with replication past this lesion in uninduced cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Differential recognition of ultraviolet lesions by RecA protein. Possible mechanism for preferential targeting of SOS mutagenesis to (6-4) dipyrimidine sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

The thymine-thymine pyrimidine-pyrimidone(6-4) ultraviolet light photoproduct is highly mutagenic and specifically induces 3' thymine-to-cytosine transitions in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Site-specific effect of thymine dimer formation on dAn.dTn tract bending and its biological implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

14 September 2017

Structure and function of DNA photolyase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

25 September 2017

UV mutagenesis, cytotoxicity and split-dose recovery in a human-CHO cell hybrid having intermediate (6-4) photoproduct repair.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

17 June 2018

1H NMR assignment and melting temperature study of cis-syn and trans-syn thymine dimer containing duplexes of d(CGTATTATGC).d(GCATAATACG).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

17 June 2018

Cyclobutane dimers and (6-4) photoproducts in human cells are mended with the same patch sizes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

17 June 2018

Reaction mechanism of (6-4) photolyase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

20 August 2018

Mutation spectra of M13 vectors containing site-specific Cis-Syn, Trans-Syn-I, (6-4), and Dewar pyrimidone photoproducts of thymidylyl-(3'-->5')-thymidine in Escherichia coli under SOS conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

20 August 2018

Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

20 August 2018

Comparative analysis of binding of human damaged DNA-binding protein (XPE) and Escherichia coli damage recognition protein (UvrA) to the major ultraviolet photoproducts: T[c,s]T, T[t,s]T, T[6-4]T, and T[Dewar]T.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

20 August 2018

Accuracy of replication past the T-C (6-4) adduct.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147757

20 August 2018

Experimental Measurement of Aromatic Stacking Affinities in the Context of Duplex DNA

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.16.3845

21 January 2018

Chattering cells: superficial pyramidal neurons contributing to the generation of synchronous oscillations in the visual cortex.

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.16.3845

21 January 2018

Properties of an unusual photoproduct of U.V. irradiated thymidylyl-thymidine

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of two mismatches G.G and I.I in the K-ras gene context by nuclear magnetic resonance and molecular dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of pyrimidine dimer unwinding angle by measurement of DNA electrophoretic mobility

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effect of single base-pair mismatches on the duplex stability of d(T-A-T-T-A-A-T-A-T-C-A-A-G-T-T-G) . d(C-A-A-C-T-T-G-A-T-A-T-T-A-A-T-A)

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

(6-4)Photoproducts are removed from the DNA of UV-irradiated mammalian cells more efficiently than cyclobutane pyrimidine dimers

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base pair mismatches and carcinogen-modified bases in DNA: an NMR study of G.T and G.O4meT pairing in dodecanucleotide duplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The relative cytotoxicity of (6-4) photoproducts and cyclobutane dimers in mammalian cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative conversion of the (6-4) photoproduct of TpdC to its Dewar valence isomer upon exposure to simulated sunlight

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo evidence that UV-induced C-->T mutations at dipyrimidine sites could result from the replicative bypass of cis-syn cyclobutane dimers or their deamination products

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR study of G.A and A.A pairing in (dGCGAATAAGCG)2

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preparation and characterization of a set of deoxyoligonucleotide 49-mers containing site-specific cis-syn, trans-syn-I, (6-4), and Dewar photoproducts of thymidylyl(3'-->5')-thymidine

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The trans-syn-I thymine dimer bends DNA by approximately 22 degrees and unwinds DNA by approximately 15 degrees

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oligonucleotides containing G.A pairs: effect of flanking sequences on structure and stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: implication in mutagenesis and repair activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamic studies of the hybridization properties of photolesions in DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR structural studies of DNA decamer duplex containing the Dewar photoproduct of thymidylyl(3'-- >5')thymidine. Conformational changes of the oligonucleotide duplex by photoconversion of a (6-4) adduct to its Dewar valence isomer

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved nearest-neighbor parameters for predicting DNA duplex stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/9685504

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/26.16.3845

1 reference

Europe PubMed Central

14 September 2017

1 reference

Europe PubMed Central

14 September 2017

1 reference

Europe PubMed Central

14 September 2017

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