(Q39763449)

English

Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities

scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

fungal community

1 reference

based on heuristic

inferred from title

author name string

Nicholas A Bokulich

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

David A Mills

2

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

language of work or name

0 references

publication date

1 February 2013

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Applied and Environmental Microbiology

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

79

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

8

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

2519-2526

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

1 reference

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22 September 2017

Next-generation approaches to the microbial ecology of food fermentations

1 reference

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22 September 2017

High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples.

1 reference

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22 September 2017

Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error

1 reference

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22 September 2017

Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale

1 reference

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22 September 2017

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

1 reference

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22 September 2017

Biodiversity in Oscypek, a traditional Polish cheese, determined by culture-dependent and -independent approaches

1 reference

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22 September 2017

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

1 reference

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Beyond bacteria: a study of the enteric microbial consortium in extremely low birth weight infants

1 reference

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22 September 2017

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

1 reference

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22 September 2017

Search and clustering orders of magnitude faster than BLAST

1 reference

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22 September 2017

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

1 reference

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22 September 2017

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

1 reference

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22 September 2017

QIIME allows analysis of high-throughput community sequencing data

1 reference

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22 September 2017

Accurate and objective copy number profiling using real-time quantitative PCR.

1 reference

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Real-time quantitative PCR (QPCR) and reverse transcription-QPCR for detection and enumeration of total yeasts in wine

1 reference

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Genome sequencing in microfabricated high-density picolitre reactors

1 reference

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22 September 2017

Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623200

22 September 2017

UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

1 reference

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22 September 2017

ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

1 reference

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22 September 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623200

22 September 2017

New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

1 reference

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20 August 2018

Unexpected convergence of fungal and bacterial communities during fermentation of traditional Korean alcoholic beverages inoculated with various natural starters.

1 reference

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20 August 2018

The UNITE database for molecular identification of fungi--recent updates and future perspectives

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3623200

20 August 2018

Short pyrosequencing reads suffice for accurate microbial community analysis

1 reference

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20 August 2018

Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?

1 reference

https://pubmed.ncbi.nlm.nih.gov/23377949

12 December 2020

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Identifiers

10.1128/AEM.03870-12

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

ResearchGate publication ID

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