(Q39773401)

English

Identification and analysis of novel tandem repeats in the cell surface proteins of archaeal and bacterial genomes using computational tools

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Identification and analysis of novel tandem repeats in the cell surface proteins of archaeal and bacterial genomes using computational tools (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

computational biology

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

author name string

S Adindla

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

K K Inampudi

2

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

K Guruprasad

3

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

L Guruprasad

4

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

publication date

1 January 2004

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Comparative and Functional Genomics

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

5

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

2-16

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

copyright license

Creative Commons Attribution 3.0 Unported

1 January 2004

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

The InterPro database, 2003 brings increased coverage and new features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447325

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Archaeal surface layer proteins contain beta propeller, PKD, and beta helix domains and are related to metazoan cell surface proteins

1 reference

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The genome of M. acetivorans reveals extensive metabolic and physiological diversity

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The Pfam protein families database

1 reference

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Recent improvements to the SMART domain-based sequence annotation resource

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The PROSITE database, its status in 2002

1 reference

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Protein repeats: structures, functions, and evolution

1 reference

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Bacterial SLH domain proteins are non-covalently anchored to the cell surface via a conserved mechanism involving wall polysaccharide pyruvylation

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Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope

1 reference

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The structure of a PKD domain from polycystin-1: implications for polycystic kidney disease

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A Tcl-based SRS v. 4 interface

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PHD--an automatic mail server for protein secondary structure prediction

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Domain structure of the Acetogenium kivui surface layer revealed by electron crystallography and sequence analysis

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1 reference

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Basic local alignment search tool

1 reference

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Surface layers of bacteria

1 reference

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Cloning and nucleotide sequence of the csp1 gene encoding PS1, one of the two major secreted proteins of Corynebacterium glutamicum: the deduced N-terminal region of PS1 is similar to the Mycobacterium antigen 85 complex

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Rapid automatic detection and alignment of repeats in protein sequences.

1 reference

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Conservation and variability in Archaea: protein antigens with tandem repeats encoded by a cluster of genes with common motifs in Methanosarcina mazei S-6.

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Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid la

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Homology-based method for identification of protein repeats using statistical significance estimates.

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Characterization of the in vivo acceptors of the mycoloyl residues transferred by the corynebacterial PS1 and the related mycobacterial antigens 85.

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Sequence analysis corresponding to the PPE and PE proteins inMycobacterium tuberculosis and other genomes

1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/18629042

12 December 2020

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A circular permutation event in the evolution of the SLH domain?

1 reference

https://pubmed.ncbi.nlm.nih.gov/18629042

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/CFG.358

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

ResearchGate publication ID

0 references

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