(Q39788897)

14 September 2017

title

Knowledge-based computational methods for identifying or designing novel, non-homologous antimicrobial peptides (English)

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14 September 2017

main subject

antimicrobial peptide

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Davor Juretić

1

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14 September 2017

Damir Vukičević

2

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14 September 2017

Dražen Petrov

3

1 reference

14 September 2017

Mario Novković

4

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14 September 2017

Viktor Bojović

5

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14 September 2017

Bono Lučić

6

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14 September 2017

Nada Ilić

7

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14 September 2017

Alessandro Tossi

8

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14 September 2017

publication date

28 January 2011

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European Biophysics Journal

14 September 2017

published in

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14 September 2017

volume

40

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14 September 2017

issue

4

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14 September 2017

page(s)

371-385

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Structure and dynamics of the antibiotic peptide PGLa in membranes by solution and solid-state nuclear magnetic resonance spectroscopy

14 September 2017

cites work

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Application of 3D-QSAR for identification of descriptors defining bioactivity of antimicrobial peptides.

21 January 2018

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Antimicrobial mechanism of pore-forming protegrin peptides: 100 pores to kill E. coli

21 January 2018

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Antibacterial and antimalarial properties of peptides that are cecropin-melittin hybrids.

21 January 2018

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Immunomodulatory activities of small host defense peptides

21 January 2018

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Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria?

21 January 2018

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Combinatorial synthesis and directed evolution applied to the production of alpha-helix forming antimicrobial peptides analogues

21 January 2018

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Can antimicrobial peptides scavenge around a cell in less than a second?

21 January 2018

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Evidence for membrane thinning effect as the mechanism for peptide-induced pore formation

21 January 2018

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Comparison of biophysical and biologic properties of alpha-helical enantiomeric antimicrobial peptides

21 January 2018

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Pathogens resistant to antibacterial agents

21 January 2018

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The ascaphins: a family of antimicrobial peptides from the skin secretions of the most primitive extant frog, Ascaphus truei.

21 January 2018

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Design of potent, non-toxic antimicrobial agents based upon the naturally occurring frog skin peptides, ascaphin-8 and peptide XT-7.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Antimicrobial peptides from the skins of North American frogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Mechanisms for evolving hypervariability: the case of conopeptides

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Transmembrane helix prediction: a comparative evaluation and analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Optimization of the antimicrobial activity of magainin peptides by modification of charge.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

In vivo efficacy of the antimicrobial peptide ranalexin in combination with the endopeptidase lysostaphin against wound and systemic meticillin-resistant Staphylococcus aureus (MRSA) infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Plasticins: membrane-damaging peptides with 'chameleon-like' properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Intrinsic flexibility and structural adaptability of Plasticins membrane-damaging peptides as a strategy for functional versatility

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Probing the "charge cluster mechanism" in amphipathic helical cationic antimicrobial peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Membrane interactions of antimicrobial peptides from Australian frogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Synergistic effects of the membrane actions of cecropin-melittin antimicrobial hybrid peptide BP100

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

AMPer: a database and an automated discovery tool for antimicrobial peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Identification of novel antibacterial peptides by chemoinformatics and machine learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

De novo design of potent antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Physico-chemical and biophysical study of the interaction of hexa- and heptaacyl lipid A from Erwinia carotovora with magainin 2-derived antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Basis for selectivity of cationic antimicrobial peptides for bacterial versus mammalian membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Structure, membrane orientation, mechanism, and function of pexiganan--a highly potent antimicrobial peptide designed from magainin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Dynamic transitions of membrane-active peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Amino acid side-chain partition energies and distribution of residues in soluble proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Cationic peptides: effectors in innate immunity and novel antimicrobials

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Cationic peptides: a new source of antibiotics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Antimicrobial and host-defense peptides as new anti-infective therapeutic strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Solution NMR studies of amphibian antimicrobial peptides: linking structure to function?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Origin of low mammalian cell toxicity in a class of highly active antimicrobial amphipathic helical peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Short linear cationic antimicrobial peptides: screening, optimizing, and prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Magainin 2 in action: distinct modes of membrane permeabilization in living bacterial and mammalian cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Interaction of protegrin-1 with lipid bilayers: membrane thinning effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Surface and inside volumes in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Effects of net charge and the number of positively charged residues on the biological activity of amphipathic alpha-helical cationic antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Influence of tryptophan on lipid binding of linear amphipathic cationic antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Basic charge clusters and predictions of membrane protein topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Computational design of highly selective antimicrobial peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Hospitalizations and deaths caused by methicillin-resistant Staphylococcus aureus, United States, 1999-2005

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Dissociation of antimicrobial and hemolytic activities in cyclic peptide diastereomers by systematic alterations in amphipathicity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

The antibacterial peptide pyrrhocoricin inhibits the ATPase actions of DnaK and prevents chaperone-assisted protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

A simple method for displaying the hydropathic character of a protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Simulation studies of the interaction of antimicrobial peptides and lipid bilayers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

AMPed up immunity: how antimicrobial peptides have multiple roles in immune defense

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Correlation between simulated physicochemical properties and hemolycity of protegrin-like antimicrobial peptides: predicting experimental toxicity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Discovery and characterization of two isoforms of moronecidin, a novel antimicrobial peptide from hybrid striped bass

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Prediction of antibiotic activity and synthesis of new pentadecapeptides based on lactoferricins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

The rapid evolution of signal peptides is mainly caused by relaxed selection on non-synonymous and synonymous sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Biological activity and structural aspects of PGLa interaction with membrane mimetic systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Structure-activity studies on magainins and other host defense peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Antibacterial peptides for therapeutic use: obstacles and realistic outlook

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Rational design of vector and antibiotic peptides using solid-state NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Control of cell selectivity of antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Kassinatuerin-1: a peptide with broad-spectrum antimicrobial activity isolated from the skin of the hyperoliid frog, Kassina senegalensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Antimicrobial peptides bind more strongly to membrane pores

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Multifunctional host defense peptides: intracellular-targeting antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

The dermaseptin superfamily: a gene-based combinatorial library of antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Lack of development of new antimicrobial drugs: a potential serious threat to public health

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Protegrin structure-activity relationships: using homology models of synthetic sequences to determine structural characteristics important for activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Design of potent, non-toxic antimicrobial agents based upon the structure of the frog skin peptide, pseudin-2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Cell-selective lysis by novel analogues of melittin against human red blood cells and Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Determination of the secondary structure of selected melittin analogues with different haemolytic activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Experimental evolution of resistance to an antimicrobial peptide.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

The co-evolution of host cationic antimicrobial peptides and microbial resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Beyond NMR spectra of antimicrobial peptides: dynamical images at atomic resolution and functional insights

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

A safe operating space for humanity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Identical skin toxins by convergent molecular adaptation in frogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

The role of amphibian antimicrobial peptides in protection of amphibians from pathogens linked to global amphibian declines

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Motifs of two small residues can assist but are not sufficient to mediate transmembrane helix interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Toroidal pores formed by antimicrobial peptides show significant disorder.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Bombinins, antimicrobial peptides from Bombina species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Orientation and dynamics of peptides in membranes calculated from 2H-NMR data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Synergistic transmembrane insertion of the heterodimeric PGLa/magainin 2 complex studied by solid-state NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Status and trends of amphibian declines and extinctions worldwide

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Deletion of two C-terminal Gln residues of 12-26-residue fragment of melittin improves its antimicrobial activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Methods for building quantitative structure-activity relationship (QSAR) descriptors and predictive models for computer-aided design of antimicrobial peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Position-dependent hydrophobicity of the antimicrobial magainin peptide affects the mode of peptide-lipid interactions and selective toxicity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

CAMP: a useful resource for research on antimicrobial peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Conditions affecting the re-alignment of the antimicrobial peptide PGLa in membranes as monitored by solid state 2H-NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Antimicrobial peptides from hylid and ranin frogs originated from a 150‐million‐year‐old ancestral precursor with a conserved signal peptide but a hypermutable antimicrobial domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Helix-packing motifs in membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

APD2: the updated antimicrobial peptide database and its application in peptide design

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Glycopeptide-resistant enterococci: a decade of experience

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Enhanced antitumor activity and selectivity of lactoferrin-derived peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Mechanisms of antimicrobial peptide action and resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Unifying themes in host defence effector polypeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Cathelicidins, multifunctional peptides of the innate immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Antimicrobial peptides of multicellular organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Alpha-helical antimicrobial peptides--using a sequence template to guide structure-activity relationship studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Potential therapeutic application of host defense peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Solid-State NMR Analysis Comparing the Designer-Made Antibiotic MSI-103 with Its Parent Peptide PGLa in Lipid Bilayers†

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

The Affinity of GXXXG Motifs in Transmembrane Helix-Helix Interactions Is Modulated by Long-range Communication

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00249-011-0674-7

Protegrin-1: a broad-spectrum, rapidly microbicidal peptide with in vivo activity.

21 January 2018

1 reference

12 December 2020

Translocation of a channel-forming antimicrobial peptide, magainin 2, across lipid bilayers by forming a pore

1 reference

12 December 2020

Amphipathic, alpha-helical antimicrobial peptides

1 reference

12 December 2020

Bombinin-like peptides with antimicrobial activity from skin secretions of the Asian toad, Bombina orientalis

1 reference

12 December 2020

Comparison of the effects of hydrophobicity, amphiphilicity, and alpha-helicity on the activities of antimicrobial peptides

1 reference

12 December 2020

Antimicrobial peptides from amphibian skin: what do they tell us?

1 reference

12 December 2020

Antibacterial peptides designed as analogs or hybrids of cecropins and melittin.

1 reference

12 December 2020

Action of antimicrobial peptides: two-state model

1 reference

12 December 2020

Brevinin-1BYa: a naturally occurring peptide from frog skin with broad-spectrum antibacterial and antifungal properties

1 reference

12 December 2020

Emerging gram-negative antibiotic resistance: daunting challenges, declining sensitivities, and dire consequences

1 reference

12 December 2020

MSI-78 Magainin Pharmaceuticals.

1 reference

12 December 2020

Design of novispirin antimicrobial peptides by quantitative structure-activity relationship

1 reference

12 December 2020

Amphipathic alpha helical antimicrobial peptides

1 reference

12 December 2020

Design of synthetic antimicrobial peptides based on sequence analogy and amphipathicity

1 reference

12 December 2020

Magainins as paradigm for the mode of action of pore forming polypeptides

1 reference

12 December 2020

Antimicrobial and host defense peptides for therapeutic use against multidrug-resistant pathogens: new hope on the horizon.

1 reference

12 December 2020

Evidence for convergent evolution in the antimicrobial peptide system in anuran amphibians.

1 reference

12 December 2020

10.1007/S00249-011-0674-7

Identifiers

DOI

1 reference

14 September 2017

1 reference