(Q39794030)

English

A novel IS element, IS621, of the IS110/IS492 family transposes to a specific site in repetitive extragenic palindromic sequences in Escherichia coli

scientific article published on August 2003

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

A novel IS element, IS621, of the IS110/IS492 family transposes to a specific site in repetitive extragenic palindromic sequences in Escherichia coli (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Escherichia coli

1 reference

based on heuristic

inferred from title

author name string

Sunju Choi

1

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Shinya Ohta

2

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Eiichi Ohtsubo

3

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

language of work or name

0 references

publication date

1 August 2003

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

number of pages

10

1 reference

based on heuristic

inferred from page(s)

Journal of Bacteriology

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

185

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

16

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

4891-4900

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

Transposition of cyanobacterium insertion element ISY100 in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Transposition of IS1397 in the family Enterobacteriaceae and first characterization of ISKpn1, a new insertion sequence associated with Klebsiella pneumoniae palindromic units

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

The PSIPRED protein structure prediction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

IS1397 is active for transposition into the chromosome of Escherichia coli K-12 and inserts specifically into palindromic units of bacterial interspersed mosaic elements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Integrating DNA: transposases and retroviral integrases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Protein secondary structure prediction based on position-specific scoring matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Excision of IS492 requires flanking target sequences and results in circle formation in Pseudoalteromonas atlantica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Multiple DNA binding activities of the novel site-specific recombinase, Piv, from Moraxella lacunata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Insertion sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Transcriptional regulation of type 4 pilin genes and the site-specific recombinase gene, piv, in Moraxella lacunata and Moraxella bovis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

The complete genome sequence of Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Characterization of IS1110, a highly mobile genetic element from Mycobacterium avium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Amino acid sequence homology between Piv, an essential protein in site-specific DNA inversion in Moraxella lacunata, and transposases of an unusual family of insertion elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Atomic structure of the RuvC resolvase: a holliday junction-specific endonuclease from E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Identification of four acidic amino acids that constitute the catalytic center of the RuvC Holliday junction resolvase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Identification of common molecular subsequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Standard reference strains of Escherichia coli from natural populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Improved tools for biological sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Repressor gene finO in plasmids R100 and F: constitutive transfer of plasmid F is caused by insertion of IS3 into F finO.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Nucleotide sequence of IS110, an insertion sequence of Streptomyces coelicolor A3(2).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Sequence and characteristics of IS900, an insertion element identified in a human Crohn's disease isolate of Mycobacterium paratuberculosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Nucleotide sequence of IS492, a novel insertion sequence causing variation in extracellular polysaccharide production in the marine bacterium Pseudomonas atlantica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Sequence analysis of the inversion region containing the pilin genes of Moraxella bovis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Identification, cloning, and sequencing of piv, a new gene involved in inverting the pilin genes of Moraxella lacunata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

A Coxiella burnetti repeated DNA element resembling a bacterial insertion sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

22 September 2017

Bacterial insertion sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

25 September 2017

The BIME family of bacterial highly repetitive sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

25 September 2017

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

IS1626, a new IS900-related Mycobacterium avium insertion sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

Characterization of IS2112, a new insertion sequence from Rhodococcus, and its relationship with mobile elements belonging to the IS110 family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

Nucleotide sequence analysis of IS1533 from Leptospira borgpetersenii: identification and expression of two IS-encoded proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

Virulence-associatedfyuA/irp2gene cluster ofYersinia enterocoliticabiotype 1B carries a novel insertion sequence IS1328

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

Cloning and sequence of IS1000, a putative insertion sequence from Thermus thermophilus HB8.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

Discovery of an insertion sequence, IS116, from Streptomyces clavuligerus and its relatedness to other transposable elements from actinomycetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

IS901, a new member of a widespread class of atypical insertion sequences, is associated with pathogenicity inMycobacterium avium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

IS902, an insertion element of the chronic-enteritis-causing Mycobacterium avium subsp. silvaticum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

17 June 2018

Structural and functional diversity among bacterial interspersed mosaic elements (BIMEs).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=166490

20 August 2018

Conserved amino acid motifs from the novel Piv/MooV family of transposases and site-specific recombinases are required for catalysis of DNA inversion by Piv

1 reference

https://pubmed.ncbi.nlm.nih.gov/12897009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis on structure-function relationship of a holliday junction specific endonuclease RuvC

1 reference

https://pubmed.ncbi.nlm.nih.gov/12897009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linearization and transposition of circular molecules of insertion sequence IS3

1 reference

https://pubmed.ncbi.nlm.nih.gov/12897009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transposition of IS1 circles

1 reference

https://pubmed.ncbi.nlm.nih.gov/12897009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular fingerprinting of Porphyromonas gingivalis by PCR of repetitive extragenic palindromic (REP) sequences and comparison with other fingerprinting methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/12897009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Screening of transgenic plants by amplification of unknown genomic DNA flanking T-DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/12897009

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.185.16.4891-4900.2003

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

release_irfpjyeyxnfj3d7mmsjrxrb7nu

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

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