(Q39959025)

15 September 2017

Thermodynamic criteria for high hit rate antisense oligonucleotide design (English)

1 reference

15 September 2017

O V Matveeva

1

1 reference

15 September 2017

D H Mathews

2

1 reference

15 September 2017

A D Tsodikov

3

1 reference

15 September 2017

S A Shabalina

4

1 reference

15 September 2017

R F Gesteland

5

1 reference

15 September 2017

J F Atkins

6

1 reference

15 September 2017

S M Freier

7

1 reference

15 September 2017

1 September 2003

1 reference

15 September 2017

Nucleic Acids Research

1 reference

15 September 2017

31

1 reference

15 September 2017

17

1 reference

15 September 2017

4989-4994

1 reference

Thermodynamic calculations and statistical correlations for oligo-probes design.

15 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

Prioritized selection of oligodeoxyribonucleotide probes for efficient hybridization to RNA transcripts

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

Theoretical design of antisense genes with statistically increased efficacy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

RNA accessibility prediction: a theoretical approach is consistent with experimental studies in cell extracts

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

Predicting oligonucleotide affinity to nucleic acid targets

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

A theoretical approach to select effective antisense oligodeoxyribonucleotides at high statistical probability

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

Theoretical and experimental approaches to design effective antisense oligonucleotides.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212809

Computer-aided calculation of the local folding potential of target RNA and its use for ribozyme design

20 August 2018

1 reference

12 December 2020

ODNBase--a web database for antisense oligonucleotide effectiveness studies. Oligodeoxynucleotides

1 reference

12 December 2020

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

12 December 2020

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

12 December 2020

Improved nearest-neighbor parameters for predicting DNA duplex stability

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG710

1 reference

15 September 2017

1 reference

15 September 2017

PubMed publication ID

12930948

1 reference