(Q39977494)

16 September 2017

UProC: tools for ultra-fast protein domain classification (English)

1 reference

16 September 2017

Peter Meinicke

1

1 reference

PMC publication ID

4410661

16 September 2017

language of work or name

English

0 references

publication date

23 December 2014

1 reference

16 September 2017

7

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

16 September 2017

31

1 reference

16 September 2017

9

1 reference

16 September 2017

1382-1388

1 reference

Creative Commons Attribution 4.0 International

16 September 2017

start time

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Protein signature-based estimation of metagenomic abundances including all domains of life and viruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

The Human Microbiome Project: a community resource for the healthy human microbiome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

FragGeneScan: predicting genes in short and error-prone reads

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

The Pfam protein families database

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

Gene prediction in metagenomic fragments: a large scale machine learning approach

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

Metagenomics: read length matters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

CDD: a database of conserved domain alignments with links to domain three-dimensional structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

KEGG: kyoto encyclopedia of genes and genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

Profile hidden Markov models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

Significant speedup of database searches with HMMs by search space reduction with PSSM family models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

Designing patterns for profile HMM search.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

Optimizing substitution matrices by separating score distributions.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4410661

10.1093/BIOINFORMATICS/BTU843

20 August 2018

Identifiers

DOI

1 reference

journals/bioinformatics/Meinicke15

16 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

4410661

16 September 2017

PubMed publication ID

25540185

1 reference

PMC publication ID

4410661