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Inferring genomic flux in bacteria
scientific article published on 17 November 2008
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scholarly article
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Europe PubMed Central
PMCID
2652212
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16 September 2017
title
Inferring genomic flux in bacteria
(English)
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Europe PubMed Central
PMCID
2652212
retrieved
16 September 2017
author
Aaron Earl Darling
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2
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Europe PubMed Central
PMCID
2652212
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16 September 2017
Xavier Didelot
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1
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Daniel Falush
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3
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Europe PubMed Central
PMCID
2652212
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16 September 2017
publication date
17 November 2008
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Europe PubMed Central
PMCID
2652212
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16 September 2017
published in
Genome Research
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Europe PubMed Central
PMCID
2652212
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16 September 2017
volume
19
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Europe PubMed Central
PMCID
2652212
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16 September 2017
page(s)
306-317
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Europe PubMed Central
PMCID
2652212
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16 September 2017
issue
2
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Europe PubMed Central
PMCID
2652212
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16 September 2017
describes a project that uses
Bayes' theorem
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Europe PubMed Central
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18 June 2022
reference URL
https://europepmc.org/article/PMC/2652212
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cites work
Uncovering rate variation of lateral gene transfer during bacterial genome evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Reduced selection leads to accelerated gene loss in Shigella
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
Genetic flux over time in the Salmonella lineage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
22 September 2017
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Evolutionary Origin and Emergence of a Highly Successful Clone of Serotype M1 Group A Streptococcus Involved Multiple Horizontal Gene Transfer Events
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Genome Sequence of a Serotype M28 Strain of Group A Streptococcus: Potential New Insights into Puerperal Sepsis and Bacterial Disease Specificity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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The complete genome sequence of Francisella tularensis, the causative agent of tularemia
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Progress toward Characterization of the Group A Streptococcus Metagenome: Complete Genome Sequence of a Macrolide‐Resistant Serotype M6 Strain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Mauve: multiple alignment of conserved genomic sequence with rearrangements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Bordetella species are distinguished by patterns of substantial gene loss and host adaptation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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1 reference
stated in
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2652212
retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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stated in
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1 reference
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stated in
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stated in
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1 reference
stated in
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stated in
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retrieved
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stated in
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reference URL
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1 reference
stated in
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reference URL
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retrieved
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reference URL
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1 reference
stated in
PubMed Central
reference URL
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1 reference
stated in
PubMed
reference URL
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retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
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1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19015321
retrieved
12 December 2020
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Identifiers
DOI
10.1101/GR.082263.108
1 reference
stated in
Europe PubMed Central
PMCID
2652212
retrieved
16 September 2017
PMCID
2652212
1 reference
stated in
Europe PubMed Central
PMCID
2652212
retrieved
16 September 2017
PubMed ID
19015321
1 reference
stated in
Europe PubMed Central
PMCID
2652212
retrieved
16 September 2017
ResearchGate publication ID
23479577
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