(Q40048604)

English

In vivo footprinting analysis of constitutive and inducible protein-DNA interactions at the long terminal repeat of human immunodeficiency virus type 1.

scientific article published on December 1993

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scholarly article

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27 October 2019

In vivo footprinting analysis of constitutive and inducible protein-DNA interactions at the long terminal repeat of human immunodeficiency virus type 1 (English)

1 reference

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27 October 2019

author name string

Demarchi F

1

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27 October 2019

D'Agaro P

2

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27 October 2019

Falaschi A

3

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27 October 2019

Giacca M

4

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27 October 2019

language of work or name

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publication date

1 December 1993

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27 October 2019

Journal of Virology

1 reference

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27 October 2019

67

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27 October 2019

7450-7460

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27 October 2019

12

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27 October 2019

HIV infection is active and progressive in lymphoid tissue during the clinically latent stage of disease

1 reference

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NF-kappa B controls expression of inhibitor I kappa B alpha: evidence for an inducible autoregulatory pathway

1 reference

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High levels of HIV-1 in plasma during all stages of infection determined by competitive PCR

1 reference

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57 Sequencing end-labeled DNA with base-specific chemical cleavages

1 reference

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Two transcription factors, NF-kappa B and H2TF1, interact with a single regulatory sequence in the class I major histocompatibility complex promoter

1 reference

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1 reference

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I kappa B: a specific inhibitor of the NF-kappa B transcription factor

1 reference

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Identification and purification of a human immunoglobulin-enhancer-binding protein (NF-kappa B) that activates transcription from a human immunodeficiency virus type 1 promoter in vitro

1 reference

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Protein-DNA interactions in vivo upstream of a cell cycle-regulated human H4 histone gene

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Activation of oncogenicity of the c-rel proto-oncogene

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Identification and purification of EBP1: a HeLa cell protein that binds to a region overlapping the 'core' of the SV40 enhancer

1 reference

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22 September 2017

In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.

1 reference

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Contingent genetic regulatory events in T lymphocyte activation

1 reference

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Temporal aspects of DNA and RNA synthesis during human immunodeficiency virus infection: evidence for differential gene expression

1 reference

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22 September 2017

Regulatory pathways governing HIV-1 replication

1 reference

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22 September 2017

Genomic footprinting: detection of putative regulatory proteins in the promoter region of the interferon alpha-1 gene in normal human tissues

1 reference

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Tumor necrosis factor alpha functions in an autocrine manner in the induction of human immunodeficiency virus expression

1 reference

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The v-rel oncogene encodes a kappa B enhancer binding protein that inhibits NF-kappa B function

1 reference

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22 September 2017

Direct and cytokine-mediated activation of protein kinase C induces human immunodeficiency virus expression in chronically infected promonocytic cells

1 reference

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22 September 2017

Inducible nuclear factor binding to the kappa B elements of the human immunodeficiency virus enhancer in T cells can be blocked by cyclosporin A in a signal-dependent manner.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=238211

22 September 2017

The NF-kappa B transcription factor induces DNA bending which is modulated by its 65-kD subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=238211

22 September 2017

Selective inhibition of activated but not basal transcription by the acidic activation domain of VP16: evidence for transcriptional adaptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=238211

22 September 2017

A large protein containing zinc finger domains binds to related sequence elements in the enhancers of the class I major histocompatibility complex and kappa immunoglobulin genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=238211

22 September 2017

Modulation of HIV-enhancer activity by heterologous agents: a minireview

1 reference

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22 September 2017

A mediator required for activation of RNA polymerase II transcription in vitro

1 reference

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22 September 2017

Induction of human immunodeficiency virus type 1 expression in chronically infected cells is associated primarily with a shift in RNA splicing patterns.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=238211

22 September 2017

DNase I-hypersensitive sites are associated with both long terminal repeats and with the intragenic enhancer of integrated human immunodeficiency virus type 1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=238211

22 September 2017

Probing the nature of chromosomal DNA-protein contacts by in vivo footprinting

1 reference

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22 September 2017

Induction of NF-kappa B DNA-binding activity during the G0-to-G1 transition in mouse fibroblasts

1 reference

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22 September 2017

Cloning of a cellular factor, interleukin binding factor, that binds to NFAT-like motifs in the human immunodeficiency virus long terminal repeat

1 reference

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Cell-type specific multiprotein complex formation over the c-fos serum response element in vivo: ternary complex formation is not required for the induction of c-fos

1 reference

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Cloning of an NF-kappa B subunit which stimulates HIV transcription in synergy with p65

1 reference

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Effects of different DNA polymerases in ligation-mediated PCR: enhanced genomic sequencing and in vivo footprinting

1 reference

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A human binding site for transcription factor USF/MLTF mimics the negative regulatory element of human immunodeficiency virus type 1.

1 reference

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Glucocorticoid receptor-binding site in the human immunodeficiency virus long terminal repeat

1 reference

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Viral DNA and mRNA expression correlate with the stage of human immunodeficiency virus (HIV) type 1 infection in humans: evidence for viral replication in all stages of HIV disease

1 reference

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Cellular transcription factors involved in the regulation of HIV-1 gene expression

1 reference

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Specific NF-kappa B subunits act in concert with Tat to stimulate human immunodeficiency virus type 1 transcription

1 reference

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Probing protein-DNA interactions at the long terminal repeat of human immunodeficiency virus type 1 by in vivo footprinting

1 reference

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NF-kappa B and related proteins: Rel/dorsal homologies meet ankyrin-like repeats

1 reference

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Human immunodeficiency virus type 1 Nef protein inhibits NF-kappa B induction in human T cells

1 reference

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Characterization and purification of a novel transcriptional repressor from HeLa cell nuclear extracts recognizing the negative regulatory element region of human immunodeficiency virus-1 long terminal repeat

1 reference

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Molecular profile of human immunodeficiency virus type 1 infection in symptomless patients and in patients with AIDS

1 reference

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The kappa B enhancer motifs in human immunodeficiency virus type 1 and simian virus 40 recognize different binding activities in human Jurkat and H9 T cells: evidence for NF-kappa B-independent activation of the kappa B motif

1 reference

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Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease

1 reference

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1 reference

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The SV40 TC-II(kappa B) enhanson binds ubiquitous and cell type specifically inducible nuclear proteins from lymphoid and non-lymphoid cell lines

1 reference

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Cell type-specificity elements of the immunoglobulin heavy chain gene enhancer

1 reference

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Cytokine-induced expression of HIV-1 in a chronically infected promonocyte cell line.

1 reference

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Activation of the HIV-1 LTR by T cell mitogens and the trans-activator protein of HTLV-I.

1 reference

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Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID).

1 reference

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Cells nonproductively infected with HIV-1 exhibit an aberrant pattern of viral RNA expression: a molecular model for latency

1 reference

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HIV enhancer activity perpetuated by NF-kappa B induction on infection of monocytes

1 reference

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An in vitro transcription analysis of early responses of the human immunodeficiency virus type 1 long terminal repeat to different transcriptional activators

1 reference

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Activation of human immunodeficiency virus type 1 provirus in T-cells and macrophages is associated with induction of inducer-specific NF-kappa B binding proteins

1 reference

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Regulation of human interleukin-2 gene: functional DNA sequences in the 5' flanking region for the gene expression in activated T lymphocytes.

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1 reference

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20 August 2018

Genomic footprinting reveals cell type-specific DNA binding of ubiquitous factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/8230466

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Massive covert infection of helper T lymphocytes and macrophages by HIV during the incubation period of AIDS

1 reference

https://pubmed.ncbi.nlm.nih.gov/8230466

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activation of HIV gene expression during monocyte differentiation by induction of NF-kB

1 reference

https://pubmed.ncbi.nlm.nih.gov/8230466

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JVI.67.12.7450-7460.1993

0 references

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8230466%20AND%20SRC:MED&resulttype=core&format=json

27 October 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8230466%20AND%20SRC:MED&resulttype=core&format=json

27 October 2019

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