(Q40140494)

17 September 2017

Simulation analysis of the retinal conformational equilibrium in dark-adapted bacteriorhodopsin (English)

1 reference

17 September 2017

Baudry J

1

1 reference

17 September 2017

Crouzy S

series ordinal

2

1 reference

17 September 2017

Roux B

series ordinal

3

1 reference

17 September 2017

Smith JC

series ordinal

4

1 reference

17 September 2017

language of work or name

English

0 references

publication date

1 April 1999

1 reference

17 September 2017

1 reference

17 September 2017

76

1 reference

17 September 2017

4

1 reference

17 September 2017

1909-1917

1 reference

Thermal motions in bacteriorhodopsin at different hydration levels studied by neutron scattering: correlation with kinetics and light-induced conformational changes

17 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Three electronic state model of the primary phototransformation of bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Proton transfer pathways in bacteriorhodopsin at 2.3 angstrom resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Molecular dynamics study of early picosecond events in the bacteriorhodopsin photocycle: dielectric response, vibrational cooling and the J, K intermediates

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

VMD: visual molecular dynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Electron-crystallographic refinement of the structure of bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Molecular dynamics study of the M412 intermediate of bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

High-pressure near-infrared Raman spectroscopy of bacteriorhodopsin light to dark adaptation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Structure and dynamics of bacteriorhodopsin. Comparison of simulation and experiment.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Molecular dynamics study of the 13-cis form (bR548) of bacteriorhodopsin and its photocycle

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Functional interactions in bacteriorhodopsin: a theoretical analysis of retinal hydrogen bonding with water

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Structure and Fluctuations of Bacteriorhodopsin in the Purple Membrane: A Molecular Dynamics Study

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Dark-adapted bacteriorhodopsin contains 13-cis, 15-syn and all-trans, 15-anti retinal Schiff bases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Rhodopsin-like protein from the purple membrane of Halobacterium halobium

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Bicycle-pedal model for the first step in the vision process

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Chromophore equilibria in bacteriorhodopsin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

The effect of protonation and electrical interactions on the stereochemistry of retinal schiff bases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Titration of aspartate-85 in bacteriorhodopsin: what it says about chromophore isomerization and proton release

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

The two pKa's of aspartate-85 and control of thermal isomerization and proton release in the arginine-82 to lysine mutant of bacteriorhodopsin.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Structure and hydration of purple membranes in different conditions

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Bacteriorhodopsin "detergent-monomers," blue shift and velocity of light-dark adaptation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Free-energy simulations of the retinal cis --> trans isomerization in bacteriorhodopsin.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Bacteriorhodopsin D85N: three spectroscopic species in equilibrium

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Structure and protein environment of the retinal chromophore in light- and dark-adapted bacteriorhodopsin studied by solid-state NMR

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1300166

Quantum dynamics of the femtosecond photoisomerization of retinal in bacteriorhodopsin

4 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

Nuclear magnetic resonance study of the Schiff base in bacteriorhodopsin: counterion effects on the 15N shift anisotropy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

Molecular dynamics study of bacteriorhodopsin and artificial pigments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

Hydration effects on the photocycle of bacteriorhodopsin in thin layers of purple membrane

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

All-atom empirical potential for molecular modeling and dynamics studies of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

Retinal isomer ratio in dark-adapted purple membrane and bacteriorhodopsin monomers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2899%2977349-2

10.1016/S0006-3495(99)77349-2

7 January 2021

Identifiers

DOI

1 reference

17 September 2017

1 reference

17 September 2017

PubMed publication ID

10096888

1 reference