(Q40197113)

18 September 2017

Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f. (English)

1 reference

18 September 2017

De Rienzo F

1

1 reference

18 September 2017

Gabdoulline RR

2

1 reference

18 September 2017

Menziani MC

3

1 reference

18 September 2017

De Benedetti PG

4

1 reference

18 September 2017

Wade RC

5

1 reference

18 September 2017

language of work or name

English

0 references

publication date

1 December 2001

1 reference

18 September 2017

15

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

18 September 2017

81

1 reference

18 September 2017

6

1 reference

18 September 2017

3090-3104

1 reference

Blue copper proteins: a comparative analysis of their molecular interaction properties

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Spectroscopic and electrochemical studies on structural change of plastocyanin and its tyrosine 83 mutants induced by interaction with lysine peptides.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Side-chain interactions in the plastocyanin-cytochrome f complex.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Electron transfers amongst cytochrome f, plastocyanin and photosystem I: kinetics and mechanisms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Structure of the soluble domain of cytochrome f from the cyanobacterium Phormidium laminosum

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Brownian dynamics study of the interaction between plastocyanin and cytochrome f

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

The structure of the complex of plastocyanin and cytochrome f, determined by paramagnetic NMR and restrained rigid-body molecular dynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Electrostatic effects on electron-transfer kinetics in the cytochrome f-plastocyanin complex

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Importance of protein rearrangement in the electron-transfer reaction between the physiological partners cytochrome f and plastocyanin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Crystal structure of chloroplast cytochrome f reveals a novel cytochrome fold and unexpected heme ligation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Plastocyanin: structural and functional analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

WHAT IF: a molecular modeling and drug design program

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Copper Protein Structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Brownian dynamics simulation of protein-protein diffusional encounter

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Crystal structure of spinach plastocyanin at 1.7 A resolution

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Simulation of the diffusional association of barnase and barstar.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Kinetic and cross-linking studies on the interactions of negative patch mutant plastocyanin from Silene pratensis with photosystem I complexes from cyanobacteria, green algae, and plants

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Electrostatic properties of cytochrome f: implications for docking with plastocyanin

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Brownian dynamics of cytochrome c and cytochrome c peroxidase association

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

On the protein-protein diffusional encounter complex.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Site-directed mutagenetic study on the role of negative patches on silene plastocyanin in the interactions with cytochrome f and photosystem I.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Electrostatic orientation of the electron-transfer complex between plastocyanin and cytochrome c

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulations

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1301771

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

2 December 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

Long-term molecular dynamics simulation of copper plastocyanin in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

The role of individual lysine residues in the basic patch on turnip cytochrome f for electrostatic interactions with plastocyanin in vitro

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

The role of amino-acid residues in the hydrophobic patch surrounding the haem group of cytochrome f in the interaction with plastocyanin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

Chemical modification of spinach plastocyanin using 4-chloro-3,5-dinitrobenzoic acid: characterization of four singly-modified forms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

Dynamic interaction of plastocyanin with the cytochrome bf complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

An all atom force field for simulations of proteins and nucleic acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

Correlation between rate of enzyme-substrate diffusional encounter and average Boltzmann factor around active site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2801%2975947-4

10.1016/S0006-3495(01)75947-4

7 January 2021

Identifiers

DOI

1 reference

18 September 2017

1 reference

18 September 2017

PubMed publication ID

11720977

1 reference