(Q40210973)

18 September 2017

Modeling shape and topology of low-resolution density maps of biological macromolecules (English)

1 reference

18 September 2017

1 reference

Pedro A De-Alarcón

1

1 reference

18 September 2017

Alberto Pascual-Montano

series ordinal

2

1 reference

18 September 2017

Amarnath Gupta

series ordinal

3

1 reference

18 September 2017

Jose M Carazo

series ordinal

4

1 reference

18 September 2017

language of work or name

English

0 references

publication date

1 August 2002

1 reference

18 September 2017

14

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

18 September 2017

83

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18 September 2017

2

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18 September 2017

619-632

1 reference

Using situs for flexible and rigid-body fitting of multiresolution single-molecule data

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Macromolecular electron microscopy in the era of structural genomics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Toward detecting and identifying macromolecules in a cellular context: template matching applied to electron tomograms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

The need for a shared database infrastructure: combining X-ray crystallography and electron microscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Structural determinants of water permeation through aquaporin-1

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

22 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Protein structure comparison by alignment of distance matrices

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Crystal structure of a conserved protease that binds DNA: the bleomycin hydrolase, Gal6

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Solvent-accessible surfaces of proteins and nucleic acids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Protein structural topology: Automated analysis and diagrammatic representation.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

A novel neural network technique for analysis and classification of EM single-particle images.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Nearest neighbor classification in 3D protein databases.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Complementing crystallography: the role of cryo-electron microscopy in structural biology.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Examination of shape complementarity in docking of unbound proteins

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Quantitative fitting of atomic models into observed densities derived by electron microscopy.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

Self-organizing neural networks bridge the biomolecular resolution gap.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302174

A Computational Approach to Edge Detection

20 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975196-5

Analytical molecular surface calculation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975196-5

Three-dimensional alpha shapes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975196-5

On the definition and the construction of pockets in macromolecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975196-5

Deposition of Macromolecular Structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975196-5

Examination of shape complementarity in docking ofUnbound proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975196-5

On Estimation of a Probability Density Function and Mode

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975196-5

10.1016/S0006-3495(02)75196-5

7 January 2021

Identifiers

DOI

1 reference

18 September 2017

1 reference

18 September 2017

PubMed publication ID

12124252

1 reference