(Q40236192)

18 September 2017

Single-strand stacking free energy from DNA beacon kinetics (English)

1 reference

PMCID

1302881

18 September 2017

Single-Strand Stacking Free Energy from DNA Beacon Kinetics (English)

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)70045-9

nucleic acid tertiary structure

28 December 2023

main subject

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

28 December 2023

molecular model

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

28 December 2023

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)70045-9

28 December 2023

author name string

Daniel P. Aalberts

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

28 December 2023

John M. Parman

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

28 December 2023

Noel L. Goddard

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

28 December 2023

language of work or name

English

0 references

publication date

1 May 2003

1 reference

PMCID

1302881

full work available at URL

18 September 2017

http://www.cell.com/article/S0006349503700459/pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

https://europepmc.org/articles/PMC1302881

28 December 2023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

https://europepmc.org/articles/PMC1302881?pdf=render

28 December 2023

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12719250

https://api.elsevier.com/content/article/PII:S0006349503700459?httpAccept=text/xml

28 December 2023

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)70045-9

https://api.elsevier.com/content/article/PII:S0006349503700459?httpAccept=text/plain

28 December 2023

1 reference

https://api.crossref.org/works/10.1016/S0006-3495(03)70045-9

28 December 2023

1 reference

18 September 2017

84

1 reference

18 September 2017

5

1 reference

18 September 2017

3212-3217

1 reference

Configurational diffusion down a folding funnel describes the dynamics of DNA hairpins

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Non-Arrhenius kinetics for the loop closure of a DNA hairpin.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Kinetics of conformational fluctuations in DNA hairpin-loops

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Molecular beacons: probes that fluoresce upon hybridization

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

A free energy analysis of nucleic acid base stacking in aqueous solution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Entropic elasticity of lambda-phage DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

On finding all suboptimal foldings of an RNA molecule

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

22 September 2017

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302881

Misfolded loops decrease the effective rate of DNA hairpin formation

22 September 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2970045-9

Sequence dependent rigidity of single stranded DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2970045-9

Statistical Mechanics of Tethered Surfaces

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2970045-9

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2970045-9

Two-state model of conformational fluctuation in a DNA hairpin-loop

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2970045-9

7 January 2021

Identifiers

1 reference

18 September 2017

1 reference

18 September 2017

1 reference

PMCID

1302881