(Q40267664)

19 September 2017

On hydrophobicity and conformational specificity in proteins (English)

1 reference

19 September 2017

1 reference

Erik Sandelin

1

1 reference

PMCID

1303785

19 September 2017

language of work or name

English

0 references

publication date

1 January 2004

1 reference

19 September 2017

1 reference

19 September 2017

86

1 reference

19 September 2017

23-30

1 reference

19 September 2017

1 Pt 1

1 reference

Perspectives on protein evolution from simple exact models.

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Anti-cooperativity and cooperativity in hydrophobic interactions: Three-body free energy landscapes and comparison with implicit-solvent potential functions for proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Contribution of polar groups in the interior of a protein to the conformational stability

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Buried charged surface in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

On hydrophobicity correlations in protein chains

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

De novo protein design. I. In search of stability and specificity.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Energy functions for protein design

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Evolution of a protein fold in vitro

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Design, structure and stability of a hyperthermophilic protein variant

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

How are model protein structures distributed in sequence space?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

De novo protein design: towards fully automated sequence selection

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

CATH--a hierarchic classification of protein domain structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Forces contributing to the conformational stability of proteins

22 September 2017

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

22 September 2017

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

7 January 2021

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

inferred from DOI database lookup

7 January 2021

based on heuristic

Do salt bridges stabilize proteins? A continuum electrostatic analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Are buried salt bridges important for protein stability and conformational specificity?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

SCOP: a structural classification of proteins database for the investigation of sequences and structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Theoretical Studies of Protein Folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Environment and exposure to solvent of protein atoms. Lysozyme and insulin

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Interior and surface of monomeric proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Spin glasses and the statistical mechanics of protein folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Dominant forces in protein folding

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Atomic solvation parameters applied to molecular dynamics of proteins in solution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

The nature of the accessible and buried surfaces in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Enumerating Designing Sequences in the HP Model

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Conservation of salt bridges in protein families.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Surface area of globular proteins.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Polar residues in the protein core of Escherichia coli thioredoxin are important for fold specificity

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Achieving stability and conformational specificity in designed proteins via binary patterning

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

An evolutionary bridge to a new protein fold.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Buried polar interactions and conformational stability in the simian immunodeficiency virus (SIV) gp41 core

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303785

Modeling protein density of states: additive hydrophobic effects are insufficient for calorimetric two-state cooperativity

20 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Structural invariants in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Design of sequences with good folding properties in coarse-grained protein models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Polymer principles of protein calorimetric two-state cooperativity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Energetic Components of Cooperative Protein Folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

A lattice statistical mechanics model of the conformational and sequence spaces of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Emergence of Preferred Structures in a Simple Model of Protein Folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Mechanism of specificity in the Fos-Jun oncoprotein heterodimer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Comparing the polarities of the amino acids: side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

Accessible area, packing volumes and interaction surfaces of globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974080-1

10.1016/S0006-3495(04)74080-1

7 January 2021

Identifiers

DOI

1 reference

19 September 2017

1 reference

19 September 2017

1 reference

PMCID

1303785