(Q40393634)

English

Structural characterization of d(CAACCCGTTG) and d(CAACGGGTTG) mini-hairpin loops by heteronuclear NMR: the effects of purines versus pyrimidines in DNA hairpins

scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Structural characterization of d(CAACCCGTTG) and d(CAACGGGTTG) mini-hairpin loops by heteronuclear NMR: the effects of purines versus pyrimidines in DNA hairpins (English)

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

author name string

D Z Avizonis

1

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

D R Kearns

2

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

publication date

1 April 1995

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

23

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

7

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

1260-1268

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Effective water resonance suppression in 1D- and 2D-FT-1H-NMR spectroscopy of biopolymers in aqueous solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Conformational analysis of a hybrid DNA-RNA double helical oligonucleotide in aqueous solution: d(CG)r(CG)d(CG) studied by 1D- and 2D-1H NMR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Anomalous hairpin formation in an oligodeoxyribonucleotide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Nuclear magnetic resonance and circular dichroism studies of a duplex--single-stranded hairpin loop equilibrium for the oligodeoxyribonucleotide sequence d(CGCGATTCGCG).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Duplex-hairpin transitions in DNA: NMR studies on CGCGTATACGCG.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Hairpin and duplex formation of the DNA octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. An NMR study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Influence of loop residues on the relative stabilities of DNA hairpin structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Perturbation of DNA hairpins containing the EcoRI recognition site by hairpin loops of varying size and composition: physical (NMR and UV) and enzymatic (EcoRI) studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Studies on the structure and stabilizing factor of the CUUCGG hairpin RNA using chemically synthesized oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Heteronuclear NMR of DNA with the heteronucleus in natural abundance: facilitated assignment and extraction of coupling constants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

22 September 2017

Kinetic and thermodynamic characterization of DNA duplex-hairpin interconversion for two DNA decamers: d(CAACGGGTTG) and d(CAACCCGTTG).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

The stability of RNA hairpin loops containing A-U-G: An-U-G-Um.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

NMR study of a synthetic DNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Oligodeoxynucleotide folding in solution: loop size and stability of B-hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Effects of base sequence on the loop folding in DNA hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Multinuclear NMR studies of DNA hairpins. 2. Sequence-dependent structural variations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Multinuclear NMR studies of DNA hairpins. 1. Structure and dynamics of d(CGCGTTGTTCGCG).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Hairpin structures in synthetic oligodeoxynucleotides: sequence effects on the duplex-to-hairpin transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

On loop folding in nucleic acid hairpin-type structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Hairpin structures in DNA containing arabinofuranosylcytosine. A combination of nuclear magnetic resonance and molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Conformational feasibility of a hairpin with two purines in the loop. 5'-d-GGTACIAGTACC-3'.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Structure of an unusually stable RNA hairpin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

An NMR study of the conformation and thermodynamics of the circular dumbbell d [formula: see text] Slow exchange between two- and four-membered hairpin loops.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

17 June 2018

Carbon-13 NMR in conformational analysis of nucleic acid fragments. 2. A reparametrization of the Karplus equation for vicinal NMR coupling constants in CCOP and HCOP fragments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306840

20 August 2018

Hairpin formation in synthetic oligonucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanism of oligonucleotide loop formation in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An NMR study of polymorphous behaviour of the mismatched DNA octamer d(m5C-G-m5C-G-A-G-m5C-G) in solution. The B-duplex and hairpin forms

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Definitions and nomenclature of nucleic acid structure parameters

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An NMR study of the polymorphous behavior of the mismatched DNA octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. The B, Z, and hairpin forms

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational and model-building studies of the hairpin form of the mismatched DNA octamer d(m5C-G-m5C-G-T-G-m5C-G)

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of a mismatched GA decamer oligodeoxyribonucleotide duplex

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hairpin formation in the self-complementary dodecamer d-GGTACGCGTACC and derivatives containing GA and IA mispairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of nucleic acid backbone conformation by 1H NMR

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/7739905

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/23.7.1260

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

ResearchGate publication ID

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