(Q40403943)

English

Versatile modes of peptide recognition by the ClpX N domain mediate alternative adaptor-binding specificities in different bacterial species

scientific article published on February 2010

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Versatile modes of peptide recognition by the ClpX N domain mediate alternative adaptor-binding specificities in different bacterial species (English)

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

author name string

Tahmeena Chowdhury

1

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Peter Chien

2

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Shamsah Ebrahim

3

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Robert T Sauer

4

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Tania A Baker

5

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

publication date

1 February 2010

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Protein Science

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

19

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

2

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

242-254

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

Recognition of misfolded proteins by Lon, a AAA(+) protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Unique contacts direct high-priority recognition of the tetrameric Mu transposase-DNA complex by the AAA+ unfoldase ClpX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Insights into adaptor binding to the AAA protein p97.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Direct and adaptor-mediated substrate recognition by an essential AAA+ protease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Structural basis of SspB-tail recognition by the zinc binding domain of ClpX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Specificity in substrate and cofactor recognition by the N-terminal domain of the chaperone ClpX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Proteolytic adaptor for transfer-messenger RNA-tagged proteins from alpha-proteobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

ATP-dependent proteases of bacteria: recognition logic and operating principles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

ClpS is an essential component of the N-end rule pathway in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Two peptide sequences can function cooperatively to facilitate binding and unfolding by ClpA and degradation by ClpAP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Modulating substrate choice: the SspB adaptor delivers a regulator of the extracytoplasmic-stress response to the AAA+ protease ClpXP for degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

WebLogo: A Sequence Logo Generator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Proteolytic degradation of Escherichia coli transcription activators SoxS and MarA as the mechanism for reversing the induction of the superoxide (SoxRS) and multiple antibiotic resistance (Mar) regulons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

The Jalview Java alignment editor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Distinct peptide signals in the UmuD and UmuD' subunits of UmuD/D' mediate tethering and substrate processing by the ClpXP protease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Proteolysis in Bacterial Regulatory Circuits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Structure of a Delivery Protein for an AAA+ Protease in Complex with a Peptide Degradation Tag

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Solution Structure of the Dimeric Zinc Binding Domain of the Chaperone ClpX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Structural basis of degradation signal recognition by SspB, a specificity-enhancing factor for the ClpXP proteolytic machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Functional proteolytic complexes of the human mitochondrial ATP-dependent protease, hClpXP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Regulation of SulA cleavage by Lon protease by the C-terminal amino acid of SulA, histidine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Functional domains of the ClpA and ClpX molecular chaperones identified by limited proteolysis and deletion analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

The RssB response regulator directly targets sigma(S) for degradation by ClpXP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Subunit-specific degradation of the UmuD/D' heterodimer by the ClpXP protease: the role of trans recognition in UmuD' stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

A specificity-enhancing factor for the ClpXP degradation machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Lon-mediated proteolysis of the Escherichia coli UmuD mutagenesis protein: in vitro degradation and identification of residues required for proteolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Mcx1p, a ClpX homologue in mitochondria of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

An essential protease involved in bacterial cell-cycle control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

22 September 2017

Structure and substrate specificity of an SspB ortholog: design implications for AAA+ adaptors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

17 June 2018

ClpS modulates but is not essential for bacterial N-end rule degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Altered tethering of the SspB adaptor to the ClpXP protease causes changes in substrate delivery.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Engineering controllable protein degradation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Versatile modes of peptide recognition by the AAA+ adaptor protein SspB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Nucleotide-dependent substrate handoff from the SspB adaptor to the AAA+ ClpXP protease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Bivalent tethering of SspB to ClpXP is required for efficient substrate delivery: a protein-design study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Targeted Delivery of an ssrA-Tagged Substrate by the Adaptor Protein SspB to Its Cognate AAA+ Protein ClpX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Flexible linkers leash the substrate binding domain of SspB to a peptide module that stabilizes delivery complexes with the AAA+ ClpXP protease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Characterization of a specificity factor for an AAA+ ATPase: assembly of SspB dimers with ssrA-tagged proteins and the ClpX hexamer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

Dynamics of substrate denaturation and translocation by the ClpXP degradation machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2865724

20 August 2018

PDZ-like domains mediate binding specificity in the Clp/Hsp100 family of chaperones and protease regulatory subunits

1 reference

https://pubmed.ncbi.nlm.nih.gov/20014030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Green fluorescent protein purification by organic extraction

1 reference

https://pubmed.ncbi.nlm.nih.gov/20014030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Substrate recognition by the ClpA chaperone component of ClpAP protease

1 reference

https://pubmed.ncbi.nlm.nih.gov/20014030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The N-terminal zinc binding domain of ClpX is a dimerization domain that modulates the chaperone function

1 reference

https://pubmed.ncbi.nlm.nih.gov/20014030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PRO.306

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

20 September 2017

ResearchGate publication ID

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