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Dynamical modeling of three-dimensional genome organization in interphase budding yeast.
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Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
title
Dynamical modeling of three-dimensional genome organization in interphase budding yeast
(English)
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stated in
Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
author
Tomoki P Terada
series ordinal
2
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Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
author name string
Naoko Tokuda
series ordinal
1
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Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
Masaki Sasai
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3
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PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
language of work or name
English
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publication date
1 January 2012
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PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
number of pages
9
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published in
Biophysical Journal
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Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
volume
102
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stated in
Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
issue
2
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Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
page(s)
296-304
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Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
cites work
Bridging the resolution gap in structural modeling of 3D genome organization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Principles of chromosomal organization: lessons from yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
The fractal globule as a model of chromatin architecture in the cell
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
The budding yeast nucleus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Looping probabilities in model interphase chromosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Gene positioning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
A three-dimensional model of the yeast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Chromatin structure: does the 30-nm fibre exist in vivo?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Role for perinuclear chromosome tethering in maintenance of genome stability.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Functional targeting of DNA damage to a nuclear pore-associated SUMO-dependent ubiquitin ligase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Long-range chromosomal interactions and gene regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Structure and dynamics of interphase chromosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Beyond the sequence: cellular organization of genome function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Long-range compaction and flexibility of interphase chromatin in budding yeast analyzed by high-resolution imaging techniques.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Theory of protein folding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Visualizing chromatin dynamics in interphase nuclei.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Conformation, energy, and folding ability of selected amino acid sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Structure of chromatin and the linking number of DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Flexibility of DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Optimal protein-folding codes from spin-glass theory
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
22 September 2017
Exact theory of kinkable elastic polymers.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
25 September 2017
Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
17 June 2018
High-resolution statistical mapping reveals gene territories in live yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
20 August 2018
The impact of gene location in the nucleus on transcriptional regulation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
20 August 2018
The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
20 August 2018
Kinking occurs during molecular dynamics simulations of small DNA minicircles.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
20 August 2018
Chromosome dynamics in the yeast interphase nucleus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
20 August 2018
Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3260687
retrieved
20 August 2018
Live imaging of telomeres: yKu and Sir proteins define redundant telomere-anchoring pathways in yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22339866
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nuclear pore association confers optimal expression levels for an inducible yeast gene
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22339866
retrieved
12 December 2020
based on heuristic
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Identifiers
DOI
10.1016/J.BPJ.2011.12.005
1 reference
stated in
Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
PMC publication ID
3260687
1 reference
stated in
Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
PubMed publication ID
22339866
1 reference
stated in
Europe PubMed Central
PMC publication ID
3260687
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22339866%20AND%20SRC:MED&resulttype=core&format=json
retrieved
23 January 2020
ResearchGate publication ID
221837484
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