(Q40516556)

21 September 2017

The effect of context on synonymous codon usage in genes with low codon usage bias (English)

1 reference

21 September 2017

1 reference

Bulmer M

1

1 reference

21 September 2017

1 May 1990

1 reference

21 September 2017

Nucleic Acids Research

1 reference

21 September 2017

18

1 reference

21 September 2017

10

1 reference

21 September 2017

2869-2873

1 reference

On the genetic basis of variation and heterogeneity of DNA base composition

21 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Mono- through hexanucleotide composition of the Escherichia coli genome: a Markov chain analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Directional mutation pressure and neutral molecular evolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

An evolutionary perspective on synonymous codon usage in unicellular organisms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Nonrandom utilization of codon pairs in Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Contextual constraints on synonymous codon choice

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Sense codons are found in specific contexts.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Codon contexts in enterobacterial and coliphage genes.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Novel third-letter bias in Escherichia coli codons revealed by rigorous treatment of coding constraints.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Coevolution of codon usage and transfer RNA abundance

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Context effects: Translation of UAG codon by suppressor tRNA is affected by the sequence following UAG in the message

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=330812

Choice of base at silent codon site 3 is not selectively neutral in eucaryotic structural genes: it maintains excess short runs of weak and strong hydrogen bonding bases

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/2190183

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Codon context effects in missense suppression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/2190183

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/18.10.2869

1 reference

21 September 2017

1 reference

PMC publication ID

330812

21 September 2017

PubMed publication ID

2190183

1 reference

PMC publication ID

330812