(Q40670050)

English

Validation of depth-dependent fluorescence quenching in membranes by molecular dynamics simulation of tryptophan octyl ester in POPC bilayer.

scientific article published on 11 April 2013

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scholarly article

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27 February 2020

Validation of depth-dependent fluorescence quenching in membranes by molecular dynamics simulation of tryptophan octyl ester in POPC bilayer (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23528135%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

Alexander Kyrychenko

1

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27 February 2020

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Douglas J Tobias

2

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27 February 2020

Alexey S Ladokhin

3

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27 February 2020

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11 April 2013

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27 February 2020

Journal of Physical Chemistry B

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27 February 2020

117

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27 February 2020

17

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27 February 2020

4770-4778

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27 February 2020

describes a project that uses

molecular dynamics simulation

1 reference

based on heuristic

inferred from title

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Recent developments in molecular dynamics simulations of fluorescent membrane probes.

1 reference

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22 September 2017

Partitioning and localization of environment-sensitive 2-(2'-pyridyl)- and 2-(2'-pyrimidyl)-indoles in lipid membranes: a joint refinement using fluorescence measurements and molecular dynamics simulations.

1 reference

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Distribution of amino acids in a lipid bilayer from computer simulations.

1 reference

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22 September 2017

Diffraction-based density restraints for membrane and membrane-peptide molecular dynamics simulations

1 reference

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1 reference

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22 September 2017

Membrane protein folding and stability: physical principles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Time-resolved distance determination by tryptophan fluorescence quenching: probing intermediates in membrane protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Analysis of protein and peptide penetration into membranes by depth-dependent fluorescence quenching: theoretical considerations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

The preference of tryptophan for membrane interfaces.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Characterization and modeling of membrane proteins using sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Fluorescence of membrane-bound tryptophan octyl ester: a model for studying intrinsic fluorescence of protein-membrane interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

22 September 2017

Evaluation of lipid exposure of tryptophan residues in membrane peptides and proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

17 June 2018

Distribution analysis of depth-dependent fluorescence quenching in membranes: a practical guide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

17 June 2018

Computational studies of Texas Red-1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine-model building and applications.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

19 August 2018

Indole localization in lipid membranes revealed by molecular simulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

19 August 2018

Lipid II induces a transmembrane orientation of the pore-forming peptide lantibiotic nisin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

19 August 2018

Joint determination by Brownian dynamics and fluorescence quenching of the in-depth location profile of biomolecules in membranes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

19 August 2018

The orientation of nisin in membranes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3652981

19 August 2018

Membrane proteins: from sequence to structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/23528135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of the depth of bromine atoms in bilayers formed from bromolipid probes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23528135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fluorescence quenching study of melittin-membrane interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/23528135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transversal distribution of acyl-linked pyrene moieties in liquid-crystalline phosphatidylcholine bilayers. A fluorescence quenching study

1 reference

https://pubmed.ncbi.nlm.nih.gov/23528135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extension of the parallax analysis of membrane penetration depth to the polar region of model membranes: use of fluorescence quenching by a spin-label attached to the phospholipid polar headgroup

1 reference

https://pubmed.ncbi.nlm.nih.gov/23528135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/23528135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Parallax method for direct measurement of membrane penetration depth utilizing fluorescence quenching by spin-labeled phospholipids

1 reference

https://pubmed.ncbi.nlm.nih.gov/23528135

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/JP310638F

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23528135%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23528135%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23528135%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

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