(Q40773408)

23 September 2017

Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy (English)

1 reference

23 September 2017

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Joongbaek Kim

1

1 reference

23 September 2017

Shige H Yoshimura

2

1 reference

23 September 2017

Kohji Hizume

3

1 reference

23 September 2017

Ryosuke L Ohniwa

4

1 reference

23 September 2017

Akira Ishihama

5

1 reference

23 September 2017

Kunio Takeyasu

6

1 reference

23 September 2017

1 April 2004

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23 September 2017

Nucleic Acids Research

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23 September 2017

32

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23 September 2017

6

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23 September 2017

1982-1992

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describes a project that uses

23 September 2017

atomic force microscopy

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Cooperation between complexes that regulate chromatin structure and transcription

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The KEGG databases at GenomeNet

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

DNA methylation-dependent chromatin fiber compaction in vivo and in vitro: requirement for linker histone

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Isolation of the Escherichia coli nucleoid

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Functional genomics of Escherichia coli in Japan

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Human chromosome structure studied by scanning force microscopy after an enzymatic digestion of the covering cell material.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Analysis of protein synthesis rates after initiation of chromosome replication in Escherichia coli

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

DNA protection by stress-induced biocrystallization

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Chromatin-modifying and -remodeling complexes

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Domain organization and oligomerization among H-NS-like nucleoid-associated proteins in bacteria.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Packaging principle: how DNA methylation and histone acetylation control the transcriptional activity of chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Chromatin fiber structure: morphology, molecular determinants, structural transitions.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The crystal structure of Dps, a ferritin homolog that binds and protects DNA

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The bacterial nucleoid visualized by fluorescence microscopy of cells lysed within agarose: comparison of Escherichia coli and spirochetes of the genus Borrelia

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The regulation of transcription initiation by integration host factor

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Chromatin Structure: A Repeating Unit of Histones and DNA

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Assembly of chromatin fibers into metaphase chromosomes analyzed by transmission electron microscopy and scanning electron microscopy

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Histonelike proteins of bacteria

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

A three-dimensional approach to mitotic chromosome structure: evidence for a complex hierarchical organization

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Nuclease hypersensitive sites in chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The bending of DNA in nucleosomes and its wider implications

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The structure and assembly of active chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

In situ nucleoprotein structure involving origin-proximal SV40 DNA control elements

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitro

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Coralline shape of the bacterial nucleoid after cryofixation

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

The Fis protein: it's not just for DNA inversion anymore

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Molecular aspects of the E. coli nucleoid protein, H-NS: a central controller of gene regulatory networks

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

3-A resolution structure of a protein with histone-like properties in prokaryotes.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

On-substrate lysis treatment combined with scanning probe microscopy revealed chromosome structures in eukaryotes and prokaryotes.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Control of transcription by nucleoid proteins

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Yeast centromere DNA is in a unique and highly ordered structure in chromosomes and small circular minichromosomes

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390363

Molecular weights of individual proteins correlate with molecular volumes measured by atomic force microscopy

19 August 2018

1 reference

12 December 2020

Atomic force microscopy sees nucleosome positioning and histone H1-induced compaction in reconstituted chromatin

1 reference

12 December 2020

Construction of artificial chromosomes in yeast

1 reference

12 December 2020

Nucleosome positioning in vivo and in vitro

1 reference

12 December 2020

Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity

1 reference

12 December 2020

DNA phase transition promoted by replication initiator

1 reference

12 December 2020

Atomic force microscopy with carbon nanotube probe resolves the subunit organization of protein complexes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKH512

1 reference

23 September 2017

1 reference

23 September 2017

PubMed publication ID

15060178

1 reference