(Q40841975)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9750216%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

title

Structure-based prediction of binding affinities and molecular design of peptide ligands (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9750216%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

0 references

1

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4 December 2019

author name string

E Freire

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9750216%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

language of work or name

English

0 references

publication date

1 January 1998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9750216%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

published in

Methods in Enzymology

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4 December 2019

volume

295

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4 December 2019

page(s)

100-127

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9750216%20AND%20SRC:MED&resulttype=core&format=json

Molecular basis of co-operativity in protein folding.

4 December 2019

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Molecular basis of co-operativity in protein folding. III. Structural identification of cooperative folding units and folding intermediates

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Structural energetics of peptide recognition: Angiotensin II/antibody binding

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Entropy in biological binding processes: estimation of translational entropy loss.

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Structure based prediction of protein folding intermediates

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Molecular basis of cooperativity in protein folding. V. Thermodynamic and structural conditions for the stabilization of compact denatured states

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Structural thermodynamics: prediction of protein stability and protein binding affinities

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Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.

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The heat capacity of proteins

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Docking enzyme-inhibitor complexes using a preference-based free-energy surface

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The enthalpy change in protein folding and binding: refinement of parameters for structure-based calculations.

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Structure-based thermodynamic scale of alpha-helix propensities in amino acids

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Structure-based thermodynamic analysis of HIV-1 protease inhibitors

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Enthalpy-entropy compensation phenomena in water solutions of proteins and small molecules: A ubiquitous properly of water

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Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin

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Probing structural and physical basis of protein energetics linked to protons and salt

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Experimental measurement of the effective dielectric in the hydrophobic core of a protein.

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On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL-5.

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The statistical-thermodynamic basis for computation of binding affinities: a critical review

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The interpretation of protein structures: Estimation of static accessibility

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7 January 2021

Modeling unfolded states of peptides and proteins

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7 January 2021

The three-dimensional structure of the aspartyl protease from the HIV-1 isolate BRU

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7 January 2021

Structure-based inhibitors of HIV-1 protease

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7 January 2021

Crystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases

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7 January 2021

Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution

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7 January 2021

An orally bioavailable HIV-1 protease inhibitor containing an imidazole-derived peptide bond replacement: crystallographic and pharmacokinetic analysis

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7 January 2021

Human immunodeficiency virus protease ligand specificity conferred by residues outside of the active site cavity

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7 January 2021

Dissection of the pH dependence of inhibitor binding energetics for an aspartic protease: direct measurement of the protonation states of the catalytic aspartic acid residues

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7 January 2021

X-ray-crystallographic studies of complexes of pepstatin A and a statine-containing human renin inhibitor with endothiapepsin

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7 January 2021

X-ray analyses of aspartic proteinases. The three-dimensional structure at 2.1 A resolution of endothiapepsin

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7 January 2021

Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism

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7 January 2021

Ionization states of the catalytic residues in HIV-1 protease

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7 January 2021

Solution NMR evidence that the HIV-1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272.

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7 January 2021

Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors.

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7 January 2021

Predicting the equilibrium protein folding pathway: structure-based analysis of staphylococcal nuclease

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7 January 2021

Structure-based statistical thermodynamic analysis of T4 lysozyme mutants: structural mapping of cooperative interactions.

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7 January 2021

Calibration of effective van der Waals atomic contact radii for proteins and peptides

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7 January 2021

Conformation of amino acid side-chains in proteins

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7 January 2021

Subsite preferences of retroviral proteinases

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7 January 2021

Different requirements for productive interaction between the active site of HIV-1 proteinase and substrates containing -hydrophobic*hydrophobic- or -aromatic*pro- cleavage sites

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7 January 2021

In vivo emergence of HIV-1 variants resistant to multiple protease inhibitors

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7 January 2021

Antibodies to the putative SIV infection-enhancing domain diminish beneficial effects of an SIV gp160 vaccine in rhesus macaques

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7 January 2021

Effect of point mutations on the kinetics and the inhibition of human immunodeficiency virus type 1 protease: relationship to drug resistance

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7 January 2021

Structural basis of drug resistance for the V82A mutant of HIV-1 proteinase

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7 January 2021

Characterization of human immunodeficiency virus type 1 variants with increased resistance to a C2-symmetric protease inhibitor

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Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9750216%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

1 reference