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Relative codon adaptation index, a sensitive measure of codon usage bias.
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scholarly article
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stated in
Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
title
Relative codon adaptation index, a sensitive measure of codon usage bias
(English)
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stated in
Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
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bias
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Soohyun Lee
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1
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Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
Seyeon Weon
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2
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Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
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5 February 2020
Sooncheol Lee
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3
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2880845
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
Changwon Kang
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4
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PMC publication ID
2880845
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5 February 2020
publication date
5 May 2010
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Europe PubMed Central
PMC publication ID
2880845
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
published in
Evolutionary Bioinformatics
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Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
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5 February 2020
volume
6
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Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
page(s)
47-55
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2880845
reference URL
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retrieved
5 February 2020
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The action of selection on codon bias in the human genome is related to frequency, complexity, and chronology of amino acids
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Correlation of codon bias measures with mRNA levels: analysis of transcriptome data from Escherichia coli
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24 September 2017
On the methodological weakness of 'the effective number of codons': a reply to Marashi and Najafabadi
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Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes
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24 September 2017
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24 September 2017
Use and misuse of correspondence analysis in codon usage studies
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24 September 2017
Synonymous codon usage in bacteria
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24 September 2017
Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine
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24 September 2017
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Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.
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24 September 2017
Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
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24 September 2017
Evolution of codon usage bias in Drosophila
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24 September 2017
Maximizing transcription efficiency causes codon usage bias
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24 September 2017
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24 September 2017
Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
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24 September 2017
Codon usage in bacteria: correlation with gene expressivity
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880845
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24 September 2017
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
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24 September 2017
Codon usage and tRNA content in unicellular and multicellular organisms
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24 September 2017
The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications
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reference URL
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24 September 2017
The 'effective number of codons' used in a gene
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880845
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24 September 2017
Evolution of codon usage patterns: the extent and nature of divergence between Candida albicans and Saccharomyces cerevisiae
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880845
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24 September 2017
Evolutionary patterns of codon usage in the chloroplast gene rbcL.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880845
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19 August 2018
Accounting for background nucleotide composition when measuring codon usage bias.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880845
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19 August 2018
DNA sequences from the str operon of Escherichia coli.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880845
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19 August 2018
Use of modified BL21(DE3) Escherichia coli cells for high-level expression of recombinant peanut allergens affected by poor codon usage
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880845
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4 November 2018
A theoretical analysis of codon adaptation index of the Boophilus microplus bm86 gene directed to the optimization of a DNA vaccine
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/20535230
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Evolution of Gene Overlaps: Relative Reading Frame Bias in Prokaryotic Two-Component System Genes
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20535230
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Codon usage determines translation rate in Escherichia coli
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20535230
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Comparison of synonymous codon distribution patterns of bacteriophage and host genomes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20535230
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The correlation of protein hydropathy with the base composition of coding sequences
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20535230
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.4137/EBO.S4608
1 reference
stated in
Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
PMC publication ID
2880845
1 reference
stated in
Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
PubMed publication ID
20535230
1 reference
stated in
Europe PubMed Central
PMC publication ID
2880845
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20535230%20AND%20SRC:MED&resulttype=core&format=json
retrieved
5 February 2020
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