(Q40914512)

24 September 2017

title

Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms (English)

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24 September 2017

author name string

Christoph Bartenhagen

series ordinal

1

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24 September 2017

Martin Dugas

series ordinal

2

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24 September 2017

publication date

20 May 2015

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Briefings in Bioinformatics

24 September 2017

published in

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24 September 2017

volume

17

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24 September 2017

issue

1

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24 September 2017

page(s)

51-62

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Mapping copy number variation by population-scale genome sequencing

24 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Mapping and sequencing of structural variation from eight human genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Diverse mechanisms of somatic structural variations in human cancer genomes

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Massive genomic rearrangement acquired in a single catastrophic event during cancer development

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Paired-end mapping reveals extensive structural variation in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

DELLY: structural variant discovery by integrated paired-end and split-read analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

An integrative probabilistic model for identification of structural variation in sequencing data

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Algorithm 457: finding all cliques of an undirected graph

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

RSVSim: an R/Bioconductor package for the simulation of structural variations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Detection of large-scale variation in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

CLEVER: clique-enumerating variant finder

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

BreaKmer: detection of structural variation in targeted massively parallel sequencing data using kmers

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV028

21 January 2018

Identifiers

DOI

10.1093/BIB/BBV028

1 reference

journals/bib/BartenhagenD16

24 September 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference