(Q41047476)

English

Mechanism of the difference in the binding affinity of E. coli tRNAGln to glutaminyl-tRNA synthetase caused by noninterface nucleotides in variable loop

scientific article published on 6 October 2006

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

Mechanism of the difference in the binding affinity of E. coli tRNAGln to glutaminyl-tRNA synthetase caused by noninterface nucleotides in variable loop (English)

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

Escherichia coli

0 references

author name string

Satoshi Yamasaki

1

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

Shugo Nakamura

2

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

Tohru Terada

3

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

Kentaro Shimizu

4

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

language of work or name

0 references

publication date

6 October 2006

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

92

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

1

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

192-200

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Tertiary core rearrangements in a tight binding transfer RNA aptamer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Molecular dynamics simulations of solvated yeast tRNA(Asp).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Universal rules and idiosyncratic features in tRNA identity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Dynamics of transfer RNAs analyzed by normal mode calculation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Essential dynamics of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Classical electrostatics in biology and chemistry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Discrimination between glutaminyl-tRNA synthetase and seryl-tRNA synthetase involves nucleotides in the acceptor helix of tRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Anticodon and acceptor stem nucleotides in tRNAGln are major recognition elements for E. coli glutaminyl-tRNA synthetase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

26 September 2017

Comparison of tRNA motions in the free and ribosomal bound structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

17 June 2018

Geometric versus topological clustering: an insight into conformation mapping.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

17 June 2018

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

17 June 2018

Recognition of bases in Escherichia coli tRNA(Gln) by glutaminyl-tRNA synthetase: a complete identity set

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

17 June 2018

Use of MM-PBSA in reproducing the binding free energies to HIV-1 RT of TIBO derivatives and predicting the binding mode to HIV-1 RT of efavirenz by docking and MM-PBSA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

19 August 2018

Effect of solvent on collective motions in globular protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1697856

19 August 2018

Theory and applications of the generalized Born solvation model in macromolecular simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/17028132

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large-amplitude nonlinear motions in proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17028132

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.106.093351

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

26 September 2017

ResearchGate publication ID

0 references

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