(Q41425687)

30 September 2017

A model of evolution and structure for multiple sequence alignment (English)

1 reference

30 September 2017

1 reference

1

1 reference

30 September 2017

2

1 reference

PMCID

2592536

30 September 2017

language of work or name

English

0 references

publication date

1 December 2008

1 reference

Philosophical Transactions of the Royal Society B

30 September 2017

1 reference

30 September 2017

363

1 reference

30 September 2017

1512

1 reference

30 September 2017

3913-3919

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

An algorithm for progressive multiple alignment of sequences with insertions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Benchmarking tools for the alignment of functional noncoding DNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Recursions for statistical multiple alignment

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Hidden Markov models for detecting remote protein homologies

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Profile hidden Markov models

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

An evolutionary model for maximum likelihood alignment of DNA sequences

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

An improved algorithm for matching biological sequences.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592536

Using guide trees to construct multiple-sequence evolutionary HMMs

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSTB.2008.0170

SATCHMO: sequence alignment and tree construction using hidden Markov models

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18852103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSTB.2008.0170

1 reference

30 September 2017

1 reference

30 September 2017

1 reference

PMCID

2592536