(Q41578212)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22021377%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro (English)

1 reference

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15 January 2020

3

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15 January 2020

author name string

Eun-Ang Raiber

1

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15 January 2020

Ramon Kranaster

2

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15 January 2020

Mehran Nikan

4

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15 January 2020

Shankar Balasubramanian

5

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15 January 2020

publication date

22 October 2011

1 reference

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15 January 2020

published in

Nucleic Acids Research

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15 January 2020

volume

40

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15 January 2020

issue

4

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15 January 2020

page(s)

1499-1508

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22021377%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

15 January 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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6 June 2018

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Solution Structure of a Unique G-Quadruplex Scaffold Adopted by a Guanosine-Rich Human Intronic Sequence

6 June 2018

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6 June 2018

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Coordinating DNA replication by means of priming loop and differential synthesis rate

6 June 2018

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Overexpression of transcription factor Sp1 leads to gene expression perturbations and cell cycle inhibition

6 June 2018

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A G-Rich Sequence within the c-kit Oncogene Promoter Forms a Parallel G-Quadruplex Having Asymmetric G-Tetrad Dynamics

6 June 2018

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G-quadruplex structures: in vivo evidence and function

6 June 2018

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Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein

6 June 2018

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FANCJ helicase defective in Fanconia anemia and breast cancer unwinds G-quadruplex DNA to defend genomic stability

6 June 2018

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The relationship of potential G-quadruplex sequences in cis-upstream regions of the human genome to SP1-binding elements

6 June 2018

1 reference

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Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes

6 June 2018

1 reference

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Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics

6 June 2018

1 reference

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Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts

6 June 2018

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Structure of an Unprecedented G-Quadruplex Scaffold in the Human c-kit Promoter

6 June 2018

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G-quadruplexes in promoters throughout the human genome

6 June 2018

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Quadruplex DNA: sequence, topology and structure

6 June 2018

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A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene

6 June 2018

1 reference

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Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

6 June 2018

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Thermal difference spectra: a specific signature for nucleic acid structures.

6 June 2018

1 reference

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Putative DNA quadruplex formation within the human c-kit oncogene

6 June 2018

1 reference

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Prevalence of quadruplexes in the human genome

6 June 2018

1 reference

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Highly prevalent putative quadruplex sequence motifs in human DNA

6 June 2018

1 reference

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Inhibition of human telomerase activity by an engineered zinc finger protein that binds G-quadruplexes.

6 June 2018

1 reference

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

6 June 2018

1 reference

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

6 June 2018

1 reference

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6 June 2018

1 reference

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Two consecutive zinc fingers in Sp1 and in MAZ are essential for interactions with cis-elements

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Selection of zinc fingers that bind single-stranded telomeric DNA in the G-quadruplex conformation

6 June 2018

1 reference

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A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Selective Sp1 binding is critical for maximal activity of the human c-kit promoter

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

The selectivity for K+ versus Na+ in DNA quadruplexes is dominated by relative free energies of hydration: a thermodynamic analysis by 1H NMR.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG)

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Sp1 elements protect a CpG island from de novo methylation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Concentration of calcium and other elements at a subcellular level in the lactating epithelium of rat.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Measurement of the binding of transcription factor Sp1 to a single GC box recognition sequence

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Purification and analysis of RNA polymerase II transcription factors by using wheat germ agglutinin affinity chromatography

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

CpG-rich islands and the function of DNA methylation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Induction of mast cell proliferation, maturation, and heparin synthesis by the rat c-kit ligand, stem cell factor

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

A novel G-quadruplex motif modulates promoter activity of human thymidine kinase 1.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Exploring the recognition of quadruplex DNA by an engineered Cys2-His2 zinc finger protein

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Structure and K+ ion-dependent stability of a parallel-stranded DNA quadruplex containing a core A-tetrad

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287196

Isolation of deletion alleles by G4 DNA-induced mutagenesis

19 August 2018

1 reference

12 December 2020

Sp1 transcription factor binds DNA and activates transcription even when the binding site is CpG methylated

1 reference

12 December 2020

Cellular nucleic-acid-binding protein, a transcriptional enhancer of c-Myc, promotes the formation of parallel G-quadruplexes

1 reference

12 December 2020

First evidence of a functional interaction between DNA quadruplexes and poly(ADP-ribose) polymerase-1

1 reference

12 December 2020

A comparison of DNA and RNA quadruplex structures and stabilities

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR882

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22021377%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22021377%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

22021377

1 reference