(Q41598213)

English

Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome

scientific article published on 23 October 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome (English)

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

1 reference

based on heuristic

inferred from title

author name string

Umadevi Paila

1

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Rohini Kondam

2

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Akash Ranjan

3

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

publication date

23 October 2008

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

36

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

21

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

6664-6675

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Protein database searches using compositionally adjusted substitution matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Annotating the Plasmodium genome and the enigma of the shikimate pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

The compositional adjustment of amino acid substitution matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Identification and initial characterization of three novel cyclin-related proteins of the human malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Genome sequence of the human malaria parasite Plasmodium falciparum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Twilight zone of protein sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Profile hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Sequence alignment and penalty choice. Review of concepts, case studies and implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Identification of common molecular subsequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Improved tools for biological sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Amino acid substitution matrices from an information theoretic perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Automated assembly of protein blocks for database searching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Amino acid substitution matrices from protein blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

6 June 2018

Construction of non-symmetric substitution matrices derived from proteomes with biased amino acid distributions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

19 August 2018

BATMAS30: amino acid substitution matrix for alignment of bacterial transporters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

19 August 2018

The grand assault

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

19 August 2018

Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

19 August 2018

Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588515

19 August 2018

A universal trend of amino acid gain and loss in protein evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/18948281

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In silico analysis and characterization of GntR family of regulators from Mycobacterium tuberculosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18948281

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKN635

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

release_po2vjkn3dzhnzjmdmqmefohyya

1 reference

https://api.fatcat.wiki/v0/release/po2vjkn3dzhnzjmdmqmefohyya

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

ResearchGate publication ID

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