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English
Scoring profile-to-profile sequence alignments
scientific article published on June 2004
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Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
title
Scoring profile-to-profile sequence alignments
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
main subject
sequence alignment
1 reference
based on heuristic
inferred from title
author
Roland Dunbrack
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
author name string
Guoli Wang
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
publication date
1 June 2004
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
published in
Protein Science
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
volume
13
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
page(s)
1612-1626
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stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
issue
6
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
cites work
Database resources of the National Center for Biotechnology Information: update
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
retrieved
6 June 2018
A graph-theory algorithm for rapid protein side-chain prediction
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
retrieved
6 June 2018
ORFeus: Detection of distant homology using sequence profiles and predicted secondary structure
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
retrieved
6 June 2018
Cyclic coordinate descent: A robotics algorithm for protein loop closure.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
CASP and CAFASP experiments and their findings
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Profile-profile alignment: a powerful tool for protein structure prediction.
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PubMed Central
reference URL
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6 June 2018
Finding weak similarities between proteins by sequence profile comparison
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6 June 2018
Comparison of sequence profiles. Strategies for structural predictions using sequence information
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Threading with explicit models for evolutionary conservation of structure and sequence
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Protein secondary structure prediction based on position-specific scoring matrices
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PubMed Central
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6 June 2018
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Fold and function predictions for Mycoplasma genitalium proteins
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6 June 2018
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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6 June 2018
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology
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6 June 2018
Searching databases of conserved sequence regions by aligning protein multiple-alignments
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Knowledge-based protein secondary structure assignment
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Protein structure comparison by alignment of distance matrices
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Non-globular domains in protein sequences: automated segmentation using complexity measures
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
SCOP: a structural classification of proteins database for the investigation of sequences and structures
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6 June 2018
Identification of common molecular subsequences
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Profile analysis: detection of distantly related proteins
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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6 June 2018
Assessment of progress over the CASP experiments
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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18 August 2018
Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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18 August 2018
PCMA: fast and accurate multiple sequence alignment based on profile consistency.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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18 August 2018
Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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18 August 2018
Large-scale comparison of protein sequence alignment algorithms with structure alignments.
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18 August 2018
PSIC: profile extraction from sequence alignments with position-specific counts of independent observations.
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279992
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18 August 2018
Performance evaluation of amino acid substitution matrices
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15152092
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Position-based sequence weights
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15152092
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Assessing the performance of fold recognition methods by means of a comprehensive benchmark
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15152092
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15152092
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1110/PS.03601504
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
PMCID
2279992
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
PubMed ID
15152092
1 reference
stated in
Europe PubMed Central
PMCID
2279992
retrieved
12 October 2017
ResearchGate publication ID
8554384
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