(Q41826751)

English

Transcript profiling and inference of Escherichia coli K-12 ArcA activity across the range of physiologically relevant oxygen concentrations

scientific article published on 20 January 2011

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Transcript profiling and inference of Escherichia coli K-12 ArcA activity across the range of physiologically relevant oxygen concentrations (English)

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Escherichia coli K-12

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author name string

Matthew D Rolfe

1

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Alex Ter Beek

2

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Alison I Graham

3

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Eleanor W Trotter

4

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

H M Shahzad Asif

5

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Guido Sanguinetti

6

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Joost Teixeira de Mattos

7

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Robert K Poole

8

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Jeffrey Green

9

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

language of work or name

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publication date

20 January 2011

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Journal of Biological Chemistry

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

286

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

12

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

10147-10154

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

Aerobic growth at nanomolar oxygen concentrations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

TFInfer: a tool for probabilistic inference of transcription factor activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

The ArcBA two-component system of Escherichia coli is regulated by the redox state of both the ubiquinone and the menaquinone pool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Dps-like proteins: structural and functional insights into a versatile protein family

1 reference

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6 June 2018

The O2 sensitivity of the transcription factor FNR is controlled by Ser24 modulating the kinetics of [4Fe-4S] to [2Fe-2S] conversion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Bioreactor scale-up and oxygen transfer rate in microbial processes: an overview

1 reference

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6 June 2018

EcoCyc: a comprehensive view of Escherichia coli biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

A novel strategy involved in [corrected] anti-oxidative defense: the conversion of NADH into NADPH by a metabolic network

1 reference

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6 June 2018

Universally applicable methods for monitoring response regulator aspartate phosphorylation both in vitro and in vivo using Phos-tag-based reagents

1 reference

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6 June 2018

Hypoxia and gastrointestinal disease

1 reference

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6 June 2018

Superoxide-mediated amplification of the oxygen-induced switch from [4Fe-4S] to [2Fe-2S] clusters in the transcriptional regulator FNR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

The lysine decarboxylase CadA protects Escherichia coli starved of phosphate against fermentation acids

1 reference

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6 June 2018

Escherichia coli HdeB is an acid stress chaperone

1 reference

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6 June 2018

Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Emergence of biofilm-forming subpopulations upon exposure of Escherichia coli to environmental bacteriophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Bacterial redox sensors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Identification of a quinone-sensitive redox switch in the ArcB sensor kinase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Design issues for cDNA microarray experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Quantitative assessment of oxygen availability: perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Multimerization of phosphorylated and non-phosphorylated ArcA is necessary for the response regulator function of the Arc two-component signal transduction system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Modulating phagocyte activation: the pros and cons of Helicobacter pylori virulence factors

1 reference

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6 June 2018

The aerobic/anaerobic interface

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

The complete genome sequence of Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Iron-sulfur cluster disassembly in the FNR protein of Escherichia coli by O2: [4Fe-4S] to [2Fe-2S] conversion with loss of biological activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

The cytochrome bd quinol oxidase in Escherichia coli has an extremely high oxygen affinity and two oxygen-binding haems: implications for regulation of activity in vivo by oxygen inhibition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Transcriptional control mediated by the ArcA two-component response regulator protein of Escherichia coli: characterization of DNA binding at target promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

The oxygen affinity of cytochrome bo' in Escherichia coli determined by the deoxygenation of oxyleghemoglobin and oxymyoglobin: Km values for oxygen are in the submicromolar range

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

6 June 2018

Changes in the redox state and composition of the quinone pool of Escherichia coli during aerobic batch-culture growth.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

18 August 2018

Transition of Escherichia coli from aerobic to micro-aerobic conditions involves fast and slow reacting regulatory components.

1 reference

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18 August 2018

Escherichia coli transcriptome dynamics during the transition from anaerobic to aerobic conditions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

18 August 2018

Quinones as the redox signal for the arc two-component system of bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

18 August 2018

DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060466

18 August 2018

Phosphorylation/dephosphorylation of the receiver module at the conserved aspartate residue controls transphosphorylation activity of histidine kinase in sensor protein ArcB of Escherichia coli.

1 reference

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18 August 2018

[10] Purification and properties of two terminal oxidase complexes of Escherichia coli aerobic respiratory chain

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.211144

21 January 2018

A novel promoter architecture for microaerobic activation by the anaerobic transcription factor FNR

1 reference

https://pubmed.ncbi.nlm.nih.gov/21252224

12 December 2020

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21252224

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Membrane D-lactate oxidase in Zymomonas mobilis: evidence for a branched respiratory chain

1 reference

https://pubmed.ncbi.nlm.nih.gov/21252224

12 December 2020

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Identifiers

10.1074/JBC.M110.211144

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

12 October 2017

ResearchGate publication ID

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