(Q41852948)

13 October 2017

Sequence effects on the relative thermodynamic stabilities of B-Z junction-forming DNA oligomeric duplexes (English)

1 reference

13 October 2017

Otokiti EO

1

1 reference

13 October 2017

Sheardy RD

series ordinal

2

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13 October 2017

language of work or name

English

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publication date

1 December 1997

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13 October 2017

7

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inferred from page(s)

published in

Biophysical Journal

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13 October 2017

73

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13 October 2017

6

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13 October 2017

3135-3141

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Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Double helical DNA: conformations, physical properties, and interactions with ligands

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Conformational flexibility of junctions between contiguous B- and Z-DNAs in supercoiled plasmids

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Effects of methylation on a synthetic polynucleotide: the B--Z transition in poly(dG-m5dC).poly(dG-m5dC).

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Predicting DNA duplex stability from the base sequence

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Preliminary spectroscopic characterization of a synthetic DNA oligomer containing a B-Z junction at high salt

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Thermodynamic comparison of the base pairs formed by the carcinogenic lesion O6-methylguanine with reference both to Watson-Crick pairs and to mismatched pairs.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Measurement of anomalously high hydration of (dA)n.(dT)n double helices in dilute solution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Enhanced reactivity of a B-Z junction for cleavage by the restriction enzyme MboI.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Unusual binding of ethidium to a deoxyoligonucleotide containing a B-Z junction

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Stacking energies in DNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Drug binding to a DNA BZ molecule: analysis by chemical footprinting

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Studies of DNA dumbbells. III. Theoretical analysis of optical melting curves of dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14)

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Salt effects on the denaturation of DNA. IV. A calorimetric study of the helix-coil conversion of the alternating copolymer poly[d(A-T)].

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

On the hydration of DNA. I. Preferential hydration and stability of DNA in concentrated trifluoroacetate solution

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181216

Influence of dangling thymidine residues on the stability and structure of two DNA duplexes

18 August 2018

1 reference

12 December 2020

Temperature-dependent CD and NMR studies on a synthetic oligonucleotide containing a B-Z junction at high salt

1 reference

12 December 2020

dC-dG alternating oligonucleotides: thermodynamic and kinetic aspects of the B-Z transformation

1 reference

12 December 2020

Thermodynamics of DNA duplexes with adjacent G.cntdot.A mismatches

1 reference

12 December 2020

Conformational properties of B-Z junctions in DNA

1 reference

12 December 2020

Importance of oligoelectrolyte end effects for the thermodynamics of conformational transitions of nucleic acid oligomers: A grand canonical Monte Carlo analysis

1 reference

12 December 2020

Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: evaluation of the nearest-neighbor stacking interactions in DNA

1 reference

12 December 2020

Volume changes correlate with entropies and enthalpies in the formation of nucleic acid homoduplexes: differential hydration of A and B conformations

1 reference

12 December 2020

A thermodynamic investigation of the melting of B-Z junction forming DNA oligomers

1 reference

12 December 2020

Differential hydration of dA.dT base pairs in parallel-stranded DNA relative to antiparallel DNA

1 reference

12 December 2020

Improved nearest-neighbor parameters for predicting DNA duplex stability

1 reference

12 December 2020

The effects of aqueous neutral-salt solutions on the melting temperatures of deoxyribonucleic acids

1 reference

12 December 2020

10.1016/S0006-3495(97)78339-5

Identifiers

DOI

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13 October 2017

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13 October 2017

PubMed publication ID

9414225

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