(Q41884528)

13 October 2017

Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics (English)

1 reference

13 October 2017

4

1 reference

13 October 2017

Jennifer A Siepen

1

1 reference

PMCID

2664920

13 October 2017

Emma-Jayne Keevil

series ordinal

2

1 reference

PMCID

2664920

13 October 2017

David Knight

series ordinal

3

1 reference

13 October 2017

1 January 2007

1 reference

Journal of Proteome Research

13 October 2017

1 reference

13 October 2017

6

1 reference

13 October 2017

399-408

1 reference

13 October 2017

1

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Optimizing search conditions for the mass fingerprint-based identification of proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Improving sensitivity in shotgun proteomics using a peptide-centric database with reduced complexity: protease cleavage and SCX elution rules from data mining of MS/MS spectra

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Proteome survey reveals modularity of the yeast cell machinery

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Algorithm for accurate similarity measurements of peptide mass fingerprints and its application

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Rapid identification of proteins by peptide-mass fingerprinting

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Analysis of missed cleavage sites, tryptophan oxidation and N-terminal pyroglutamylation after in-gel tryptic digestion

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Probability-based protein identification by searching sequence databases using mass spectrometry data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

The structural aspects of limited proteolysis of native proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

On the size of the active site in proteases. I. Papain

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2664920

Universal Metrics for Quality Assessment of Protein Identifications by Mass Spectrometry

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17203985

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR060507U

1 reference

13 October 2017

1 reference

13 October 2017

1 reference

PMCID

2664920