(Q41950902)

14 October 2017

A new systematic computational approach to predicting target genes of transcription factors (English)

1 reference

14 October 2017

Xinbin Dai

1

1 reference

14 October 2017

Ji He

series ordinal

2

1 reference

14 October 2017

Xuechun Zhao

series ordinal

3

1 reference

14 October 2017

18 June 2007

1 reference

14 October 2017

Nucleic Acids Research

1 reference

14 October 2017

35

1 reference

14 October 2017

13

1 reference

14 October 2017

4433-4440

1 reference

Large-scale turnover of functional transcription factor binding sites in Drosophila

14 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Lessons from Nature: microRNA-based shRNA libraries

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Integrating genomic data to predict transcription factor binding.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

From sequence to structure and back again: approaches for predicting protein-DNA binding

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Combining phylogenetic data with co-regulated genes to identify regulatory motifs

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Distribution patterns of over-represented k-mers in non-coding yeast DNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Detection of cis-element clusters in higher eukaryotic DNA.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

An overview of the structures of protein-DNA complexes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

DNA binding sites: representation and discovery

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

ABFs, a family of ABA-responsive element binding factors

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Soybean GH3 promoter contains multiple auxin-inducible elements

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

n-gram-based classification and unsupervised hierarchical clustering of genome sequences.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

Combining frequency and positional information to predict transcription factor binding sites

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1935008

A novel feature of DNA recognition: a mutant Gcn4p bZip peptide with dual DNA binding specificities dependent of half-site spacing

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17576669

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DATF: a database of Arabidopsis transcription factors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17576669

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Composite structure of auxin response elements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17576669

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM454

1 reference

14 October 2017

1 reference

14 October 2017

PubMed publication ID

17576669

1 reference