(Q41977255)

English

PAS domain allostery and light-induced conformational changes in photoactive yellow protein upon I2 intermediate formation, probed with enhanced hydrogen/deuterium exchange mass spectrometry

scientific article published on August 2006

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

PAS domain allostery and light-induced conformational changes in photoactive yellow protein upon I2 intermediate formation, probed with enhanced hydrogen/deuterium exchange mass spectrometry (English)

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

author name string

Ronald Brudler

1

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Chris R Gessner

2

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Sheng Li

3

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Sammy Tyndall

4

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Elizabeth D Getzoff

5

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Virgil L Woods

6

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

language of work or name

0 references

publication date

1 August 2006

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

363

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

1

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

148-160

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Structure and properties of alpha-synuclein and other amyloids determined at the amino acid level

1 reference

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Allosteric mechanisms of signal transduction

1 reference

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Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds

1 reference

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5 June 2018

Predicting the signaling state of photoactive yellow protein

1 reference

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Dynamical transition and proteinquake in photoactive yellow protein

1 reference

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Structural determinants for generating centromeric chromatin

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Protein kinetics: structures of intermediates and reaction mechanism from time-resolved x-ray data

1 reference

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Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.

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The role of dynamics in allosteric regulation

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Structural basis for PAS domain heterodimerization in the basic helix-loop-helix-PAS transcription factor hypoxia-inducible factor

1 reference

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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

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Dissecting interdomain communication within cAPK regulatory subunit type IIbeta using enhanced amide hydrogen/deuterium exchange mass spectrometry (DXMS)

1 reference

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Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation

1 reference

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Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry.

1 reference

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Photoactive Yellow Protein: A Prototypic PAS Domain Sensory Protein and Development of a Common Signaling Mechanism

1 reference

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Crystal structure of a photoactive yellow protein from a sensor histidine kinase: Conformational variability and signal transduction

1 reference

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The LOV domain family: photoresponsive signaling modules coupled to diverse output domains

1 reference

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Domain organization of D-AKAP2 revealed by enhanced deuterium exchange-mass spectrometry (DXMS).

1 reference

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Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with Nile Red.

1 reference

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5 June 2018

Structure of the I1 early intermediate of photoactive yellow protein by FTIR spectroscopy

1 reference

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5 June 2018

Probing the nature of the blue-shifted intermediate of photoactive yellow protein in solution by NMR: hydrogen-deuterium exchange data and pH studies

1 reference

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5 June 2018

Femtosecond spectroscopic observations of initial intermediates in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila

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Biological sensors: More than one way to sense oxygen

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5 June 2018

PAS domains: internal sensors of oxygen, redox potential, and light

1 reference

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5 June 2018

Solution structure and backbone dynamics of the photoactive yellow protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575420

5 June 2018

Structural and dynamic changes of photoactive yellow protein during its photocycle in solution

1 reference

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5 June 2018

Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575420

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Structure at 0.85 A resolution of an early protein photocycle intermediate

1 reference

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Structure of a protein photocycle intermediate by millisecond time-resolved crystallography

1 reference

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Active site mutants implicate key residues for control of color and light cycle kinetics of photoactive yellow protein

1 reference

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Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein.

1 reference

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Primary structure effects on peptide group hydrogen exchange

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5 June 2018

Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila

1 reference

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1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore

1 reference

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Photobleaching of the photoactive yellow protein from Ectothiorhodospira halophila promotes binding to lipid bilayers: evidence from surface plasmon resonance spectroscopy

1 reference

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Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin

1 reference

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Amino acid preferences for specific locations at the ends of alpha helices

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Photoactive yellow protein from the purple phototrophic bacterium, Ectothiorhodospira halophila. Quantum yield of photobleaching and effects of temperature, alcohols, glycerol, and sucrose on kinetics of photobleaching and recovery

1 reference

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Time-resolved single tryptophan fluorescence in photoactive yellow protein monitors changes in the chromophore structure during the photocycle via energy transfer

1 reference

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The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein

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Coupled motions in the SH2 and kinase domains of Csk control Src phosphorylation

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Molecular interactions between matrilysin and the matrix metalloproteinase inhibitor doxycycline investigated by deuterium exchange mass spectrometry

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Allosteric network of cAMP-dependent protein kinase revealed by mutation of Tyr204 in the P+1 loop

1 reference

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A structural pathway for signaling in the E46Q mutant of photoactive yellow protein.

1 reference

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Structural heterogeneity of cryotrapped intermediates in the bacterial blue light photoreceptor, photoactive yellow protein.

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Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk.

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Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein.

1 reference

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1 reference

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Tryptophan fluorescence monitors structural changes accompanying signalling state formation in the photocycle of photoactive yellow protein

1 reference

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Short hydrogen bonds in photoactive yellow protein

1 reference

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Lack of negative charge in the E46Q mutant of photoactive yellow protein prevents partial unfolding of the blue-shifted intermediate

1 reference

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Structural basis of a phototropin light switch.

1 reference

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1 reference

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Dynamics of protein and chromophore structural changes in the photocycle of photoactive yellow protein monitored by time-resolved optical rotatory dispersion

1 reference

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1 reference

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Effect of organic anions on the photoreaction of photoactive yellow protein

1 reference

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Kinetics of proton uptake and dye binding by photoactive yellow protein in wild type and in the E46Q and E46A mutants

1 reference

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High resolution, high-throughput amide deuterium exchange-mass spectrometry (DXMS) determination of protein binding site structure and dynamics: utility in pharmaceutical design.

1 reference

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Light-induced unfolding of photoactive yellow protein mutant M100L.

1 reference

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18 August 2018

Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575420

18 August 2018

Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation

1 reference

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18 August 2018

PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation

1 reference

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18 August 2018

Light induces destabilization of photoactive yellow protein

1 reference

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Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes

1 reference

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18 August 2018

Global conformational changes upon receptor stimulation in photoactive yellow protein.

1 reference

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Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry

1 reference

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18 August 2018

Role of an N-terminal loop in the secondary structural change of photoactive yellow protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/16952373

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signalling state formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16952373

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Light-induced global conformational change of photoactive yellow protein in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16952373

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry

1 reference

https://pubmed.ncbi.nlm.nih.gov/16952373

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2006.07.078

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

ResearchGate publication ID

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