(Q41986081)

English

Multiple global conformational states of the hexameric RepA helicase of plasmid RSF1010 with different ssDNA-binding capabilities are induced by different numbers of bound nucleotides. Analytical ultracentrifugation and dynamic light scattering stud

scientific article published on 27 June 2007

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Multiple global conformational states of the hexameric RepA helicase of plasmid RSF1010 with different ssDNA-binding capabilities are induced by different numbers of bound nucleotides. Analytical ultracentrifugation and dynamic light scattering stud (English)

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

author name string

Agnieszka Marcinowicz

1

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Maria J Jezewska

2

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Wlodzimierz Bujalowski

3

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

language of work or name

0 references

publication date

27 June 2007

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

375

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

2

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

386-408

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Interactions of the RepA helicase hexamer of plasmid RSF1010 with the ssDNA. Quantitative analysis of stoichiometries, intrinsic affinities, cooperativities, and heterogeneity of the total ssDNA-binding site

1 reference

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5 June 2018

Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: Integration of helicases into cellular processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Helicase mechanisms and the coupling of helicases within macromolecular machines. Part I: Structures and properties of isolated helicases

1 reference

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5 June 2018

Flexibility of the rings: structural asymmetry in the DnaB hexameric helicase

1 reference

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5 June 2018

Crystal structure of the hexameric replicative helicase RepA of plasmid RSF1010

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Sedimentation studies reveal a direct role of phosphorylation in Smad3:Smad4 homo- and hetero-trimerization

1 reference

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5 June 2018

Interactions of Escherichia coli replicative helicase PriA protein with single-stranded DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Escherichia coli replicative helicase PriA protein-single-stranded DNA complex. Stoichiometries, free energy of binding, and cooperativities

1 reference

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5 June 2018

Kinetic mechanism of the single-stranded DNA recognition by Escherichia coli replicative helicase DnaB protein. Application of the matrix projection operator technique to analyze stopped-flow kinetics

1 reference

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5 June 2018

Sedimentation analysis of noninteracting and self-associating solutes using numerical solutions to the Lamm equation

1 reference

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5 June 2018

Functional and structural heterogeneity of the DNA binding site of the Escherichia coli primary replicative helicase DnaB protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

The RepA protein of plasmid RSF1010 is a replicative DNA helicase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Interactions of Escherichia coli primary replicative helicase DnaB protein with nucleotide cofactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Mechanisms of helicase-catalyzed DNA unwinding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Binding of Escherichia coli primary replicative helicase DnaB protein to single-stranded DNA. Long-range allosteric conformational changes within the protein hexamer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Spectroscopic Determination of Tryptophan and Tyrosine in Proteins*

1 reference

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5 June 2018

Molecular Nature of Two Nonconjugative Plasmids Carrying Drug Resistance Genes

1 reference

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5 June 2018

Calculation of protein extinction coefficients from amino acid sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Structure and assembly of the Escherichia coli transcription termination factor rho and its interactions with RNA I. Cryoelectron microscopic studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Functional interactions of ligand cofactors with Escherichia coli transcription termination factor rho. I. Binding of ATP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

Cooperative and non-cooperative binding of large ligands to a finite one-dimensional lattice. A model for ligand-oligonucleotide interactions

1 reference

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5 June 2018

4 The calculation of partial specific volumes of proteins in 6 M guanidine hydrochloride

1 reference

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5 June 2018

Replication of the nonconjugative plasmid RSF1010 in Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

5 June 2018

The Escherichia coli PriA helicase has two nucleotide-binding sites differing dramatically in their affinities for nucleotide cofactors. 1. Intrinsic affinities, cooperativities, and base specificity of nucleotide cofactor binding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

18 August 2018

Binding of six nucleotide cofactors to the hexameric helicase RepA protein of plasmid RSF1010. 2. Base specificity, nucleotide structure, magnesium, and salt effect on the cooperative binding of the cofactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

18 August 2018

Binding of six nucleotide cofactors to the hexameric helicase RepA protein of plasmid RSF1010. 1. Direct evidence of cooperative interactions between the nucleotide-binding sites of a hexameric helicase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

18 August 2018

Catalytic cooperativity among subunits of Escherichia coli transcription termination factor Rho. Kinetics and substrate structural requirements

1 reference

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18 August 2018

Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method

1 reference

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18 August 2018

Multistep sequential mechanism of Escherichia coli helicase PriA protein-ssDNA interactions. Kinetics and energetics of the active ssDNA-searching site of the enzyme

1 reference

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18 August 2018

Global conformation of the Escherichia coli replication factor DnaC protein in absence and presence of nucleotide cofactors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

18 August 2018

Interactions of the Escherichia coli DnaB helicase hexamer with the replication factor the DnaC protein. Effect of nucleotide cofactors and the ssDNA on protein-protein interactions and the topology of the complex

1 reference

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18 August 2018

Expanding the physiological role of the hexameric DnaB helicase.

1 reference

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18 August 2018

DnaB drives DNA branch migration and dislodges proteins while encircling two DNA strands.

1 reference

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18 August 2018

Characterization of the nucleotide binding properties of SV40 T antigen using fluorescent 3'(2')-O-(2,4,6-trinitrophenyl)adenine nucleotide analogues

1 reference

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18 August 2018

Negative cooperativity in the binding of nucleotides to Escherichia coli replicative helicase DnaB protein. Interactions with fluorescent nucleotide analogs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

18 August 2018

Interactions of Escherichia coli primary replicative helicase DnaB protein with single-stranded DNA. The nucleic acid does not wrap around the protein hexamer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3071628

18 August 2018

Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile

1 reference

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Strand specificity in the interactions of Escherichia coli primary replicative helicase DnaB protein with a replication fork

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complex of Escherichia coli primary replicative helicase DnaB protein with a replication fork: recognition and structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein hydration. II. Specific heat of egg albumin

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The phage T4-coded DNA replication helicase (gp41) forms a hexamer upon activation by nucleoside triphosphate

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Does single-stranded DNA pass through the inner channel of the protein hexamer in the complex with the Escherichia coli DnaB Helicase? Fluorescence energy transfer studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Organization of the archaeal MCM complex on DNA and implications for the helicase mechanism

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Oligomeric structure of Escherichia coli primary replicative helicase DnaB protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein hydration. I. Binding sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple-step kinetic mechanism of DNA-independent ATP binding and hydrolysis by Escherichia coli replicative helicase DnaB protein: quantitative analysis using the rapid quench-flow method

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A general method of analysis of ligand binding to competing macromolecules using the spectroscopic signal originating from a reference macromolecule. Application to Escherichia coli replicative helicase DnaB protein nucleic acid interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystallization and preliminary X-ray crystallographic and electron microscopic study of a bacterial DNA helicase (RSF1010 RepA)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HexamericE. coliDnaB Helicase can Exist in Different Quarternary States

1 reference

https://pubmed.ncbi.nlm.nih.gov/18022636

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2007.06.051

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

ResearchGate publication ID

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