(Q42067818)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25975962%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Atomistic design of microbial opsin-based blue-shifted optogenetics tools (English)

1 reference

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8 March 2020

1 reference

1

1 reference

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8 March 2020

Jumpei Ito

4

1 reference

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8 March 2020

Kunio Hirata

7

1 reference

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8 March 2020

Ayumu Inutsuka

8

1 reference

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8 March 2020

author name string

Motoshi Kamiya

2

1 reference

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8 March 2020

Seiya Sugo

3

1 reference

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8 March 2020

Reiya Taniguchi

5

1 reference

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8 March 2020

Ayaka Orito

6

1 reference

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8 March 2020

Akihiro Yamanaka

9

1 reference

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8 March 2020

Andrés D Maturana

10

1 reference

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8 March 2020

Ryuichiro Ishitani

11

1 reference

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8 March 2020

Yuki Sudo

12

1 reference

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8 March 2020

Shigehiko Hayashi

13

1 reference

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8 March 2020

Osamu Nureki

14

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8 March 2020

language of work or name

English

0 references

publication date

15 May 2015

1 reference

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8 March 2020

published in

Nature Communications

1 reference

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8 March 2020

volume

6

1 reference

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8 March 2020

page(s)

7177

1 reference

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Creative Commons Attribution 4.0 International

8 March 2020

copyright license

start time

15 May 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Structure-guided transformation of channelrhodopsin into a light-activated chloride channel

5 June 2018

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Independent optical excitation of distinct neural populations

5 June 2018

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Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

5 June 2018

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Characterization of a highly efficient blue-shifted channelrhodopsin from the marine alga Platymonas subcordiformis

5 June 2018

1 reference

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ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation

5 June 2018

1 reference

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Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics

5 June 2018

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Recent advances in optogenetics and pharmacogenetics

5 June 2018

1 reference

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Tuning the Electronic Absorption of Protein-Embedded All-trans-Retinal

5 June 2018

1 reference

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Color-tuned channelrhodopsins for multiwavelength optogenetics

5 June 2018

1 reference

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An improved genetically encoded red fluorescent Ca2+ indicator for detecting optically evoked action potentials

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Crystal structure of the channelrhodopsin light-gated cation channel

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

The microbial opsin family of optogenetic tools

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

A Transporter Converted into a Sensor, a Phototaxis Signaling Mutant of Bacteriorhodopsin at 3.0 Å

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Neocortical excitation/inhibition balance in information processing and social dysfunction

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Molecular mechanism of long-range synergetic color tuning between multiple amino acid residues in conger rhodopsin

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Spectral tuning in sensory rhodopsin I from Salinibacter ruber

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

High-performance genetically targetable optical neural silencing by light-driven proton pumps

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Optical interrogation of neural circuits in Caenorhabditis elegans

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Characterization of a signaling complex composed of sensory rhodopsin I and its cognate transducer protein from the eubacterium Salinibacter ruber

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Characterization of engineered channelrhodopsin variants with improved properties and kinetics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Molecular determinants differentiating photocurrent properties of two channelrhodopsins from chlamydomonas.

5 June 2018

1 reference

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Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

The color of rhodopsins at the ab initio multiconfigurational perturbation theory resolution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Scalable molecular dynamics with NAMD

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Millisecond-timescale, genetically targeted optical control of neural activity

5 June 2018

1 reference

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Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

X-ray structure of sensory rhodopsin II at 2.1-A resolution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Crystal Structure of Sensory Rhodopsin II at 2.4 Angstroms: Insights into Color Tuning and Transducer Interaction

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin.

5 June 2018

1 reference

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Structure of bacteriorhodopsin at 1.55 A resolution

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

X-ray Structure of Bacteriorhodopsin at 2.5 Angstroms from Microcrystals Grown in Lipidic Cubic Phases

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Gene replacement in Halobacterium halobium and expression of bacteriorhodopsin mutants

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Functional interactions in bacteriorhodopsin: a theoretical analysis of retinal hydrogen bonding with water

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Theoretical Studies on the Color-Tuning Mechanism in Retinal Proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Directed evolution of Gloeobacter violaceus rhodopsin spectral properties.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

A blue-shifted light-driven proton pump for neural silencing

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Optogenetic activation during detector "dead time" enables compatible real-time fluorescence imaging

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Controlling the Brain with Light

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Probing and modeling the absorption of retinal protein chromophores in vacuo.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Calculating absorption shifts for retinal proteins: computational challenges.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Kinetic evaluation of photosensitivity in genetically engineered neurons expressing green algae light-gated channels

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Probing the rhodopsin cavity with reduced retinal models at the CASPT2//CASSCF/AMBER level of theory

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Polyunsaturated fatty acids in lipid bilayers: intrinsic and environmental contributions to their unique physical properties.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Environment around the chromophore in pharaonis phoborhodopsin: mutation analysis of the retinal binding site

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

Molecular mechanism of spectral tuning in sensory rhodopsin II.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4479019

General atomic and molecular electronic structure system

17 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS8177

Structural Determinants of Spectral Tuning in Retinal ProteinsBacteriorhodopsin vs Sensory Rhodopsin II#

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS8177

Color regulation in the archaebacterial phototaxis receptor phoborhodopsin (sensory rhodopsin II)

21 January 2018

1 reference

12 December 2020

Bacteriorhodopsin mutants of Halobacterium sp. GRB. II. Characterization of mutants

1 reference

12 December 2020

QM/MM Reweighting Free Energy SCF for Geometry Optimization on Extensive Free Energy Surface of Enzymatic Reaction

1 reference

12 December 2020

Effects of three characteristic amino acid residues of pharaonis phoborhodopsin on the absorption maximum

1 reference

12 December 2020

Crucial role of protein flexibility in formation of a stable reaction transition state in an α-amylase catalysis

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS8177

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25975962%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25975962%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

25975962

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25975962%20AND%20SRC:MED&resulttype=core&format=json