(Q42119559)

16 October 2017

The two-regime method for optimizing stochastic reaction-diffusion simulations (English)

1 reference

16 October 2017

Mark B Flegg

1

1 reference

PMCID

3306650

16 October 2017

S Jonathan Chapman

series ordinal

2

1 reference

PMCID

3306650

16 October 2017

Radek Erban

series ordinal

3

1 reference

16 October 2017

19 October 2011

1 reference

Journal of the Royal Society Interface

16 October 2017

1 reference

16 October 2017

9

1 reference

16 October 2017

70

1 reference

16 October 2017

859-868

1 reference

Stochastic reaction-diffusion kinetics in the microscopic limit

16 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Reaction-diffusion master equation, diffusion-limited reactions, and singular potentials

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Detailed simulations of cell biology with Smoldyn 2.1

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Spatio-temporal correlations can drastically change the response of a MAPK pathway

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Accurate particle-based simulation of adsorption, desorption and partial transmission

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Fundamental limits to position determination by concentration gradients

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Pre-steady-state decoding of the Bicoid morphogen gradient

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Noise-induced Min phenotypes in E. coli

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Stochastic reaction-diffusion simulation with MesoRD.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Whole-cell simulation: a grand challenge of the 21st century

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

E-CELL: software environment for whole-cell simulation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Role of spatial averaging in the precision of gene expression patterns.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Reactive boundary conditions for stochastic simulations of reaction-diffusion processes.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Stochastic simulation of chemical reactions with spatial resolution and single molecule detail.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3306650

Exact stochastic simulation of coupled chemical reactions

17 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSIF.2011.0574

Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1098%2FRSIF.2011.0574

Simulating biochemical networks at the particle level and in time and space: Green's function reaction dynamics

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22012973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSIF.2011.0574

1 reference

16 October 2017

1 reference

16 October 2017

1 reference

PMCID

3306650