(Q42134794)

17 October 2017

An integrative approach to infer regulation programs in a transcription regulatory module network (English)

1 reference

17 October 2017

2

1 reference

17 October 2017

Jianlong Qi

1

1 reference

17 October 2017

Gregory Butler

series ordinal

3

1 reference

17 October 2017

language of work or name

English

0 references

publication date

11 April 2012

1 reference

Journal of Biomedicine and Biotechnology

17 October 2017

1 reference

17 October 2017

2012

1 reference

17 October 2017

245968

1 reference

Creative Commons Attribution 3.0 Unported

17 October 2017

start time

1 January 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3336162

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Towards a rigorous assessment of systems biology models: the DREAM3 challenges

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

RankAggreg, an R package for weighted rank aggregation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Analysis of a Gibbs sampler method for model-based clustering of gene expression data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Nitrogen regulation in Saccharomyces cerevisiae

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Rich probabilistic models for gene expression

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Using Bayesian networks to analyze expression data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Genomic expression programs in the response of yeast cells to environmental changes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

The level of DAL80 expression down-regulates GATA factor-mediated transcription in Saccharomyces cerevisiae

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Lessons from the DREAM2 Challenges

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Module networks revisited: computational assessment and prioritization of model predictions

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3336162

17 August 2018

Identifiers

DOI

10.1155/2012/245968

1 reference

17 October 2017

1 reference

17 October 2017

PubMed publication ID

22577292

1 reference