(Q42249447)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

title

Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Andreas S Richter

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Rolf Backofen

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

author name string

Stefan E Seemann

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

language of work or name

1 reference

21 May 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

Algorithms for Molecular Biology

3 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

page(s)

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1186/1748-7188-5-22

3 February 2020

exact match

0 references

cites work

Computational prediction of sRNAs and their targets in bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Target prediction and a statistical sampling algorithm for RNA-RNA interaction

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

A partition function algorithm for interacting nucleic acid strands

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Structured RNAs in the ENCODE selected regions of the human genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Partition function and base pairing probabilities of RNA heterodimers

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Identification and classification of conserved RNA secondary structures in the human genome

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Thermodynamics of RNA-RNA binding

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

RNA secondary structure prediction using stochastic context-free grammars and evolutionary history

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Partition function and base pairing probabilities for RNA-RNA interaction prediction

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

RNA-RNA interaction prediction and antisense RNA target search.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

IRIS: intermolecular RNA interaction search.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Secondary structure prediction of interacting RNA molecules.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Evolutionary rate variation and RNA secondary structure prediction.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903599

Prediction of RNA secondary structure by energy minimization

30 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20492641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20492641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1748-7188-5-22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

journals/almob/SeemannRGB10

3 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1748-7188-5-22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20492641%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

PubMed publication ID

20492641

1 reference