(Q42549208)

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Conformational state distributions and catalytically relevant dynamics of a hinge-bending enzyme studied by single-molecule FRET and a coarse-grained simulation

scientific article published on October 2014

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23 February 2020

Conformational state distributions and catalytically relevant dynamics of a hinge-bending enzyme studied by single-molecule FRET and a coarse-grained simulation (English)

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23 February 2020

Alexandros Katranidis

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23 February 2020

Gerhard Gompper

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23 February 2020

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23 February 2020

Roland G Winkler

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23 February 2020

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23 February 2020

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Matteo Gabba

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23 February 2020

Simón Poblete

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23 February 2020

Tobias Rosenkranz

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23 February 2020

Daryan Kempe

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23 February 2020

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1 October 2014

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23 February 2020

Biophysical Journal

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23 February 2020

107

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23 February 2020

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23 February 2020

1913-1923

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23 February 2020

Theory of the energy transfer efficiency and fluorescence lifetime distribution in single-molecule FRET

1 reference

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Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

1 reference

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28 May 2018

Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation

1 reference

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28 May 2018

A spring-loaded release mechanism regulates domain movement and catalysis in phosphoglycerate kinase

1 reference

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28 May 2018

Native and unfolded states of phosphoglycerate kinase studied by single-molecule FRET.

1 reference

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Structural landscape of isolated agonist-binding domains from single AMPA receptors

1 reference

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28 May 2018

FRET efficiency distributions of multistate single molecules

1 reference

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28 May 2018

Large domain fluctuations on 50-ns timescale enable catalytic activity in phosphoglycerate kinase.

1 reference

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28 May 2018

Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

1 reference

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Extracting rate coefficients from single-molecule photon trajectories and FRET efficiency histograms for a fast-folding protein.

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Detecting intramolecular dynamics and multiple Förster resonance energy transfer states by fluorescence correlation spectroscopy

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28 May 2018

Insight into the mechanism of domain movements and their role in enzyme function: example of 3-phosphoglycerate kinase

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Conformational transitions in DNA polymerase I revealed by single-molecule FRET.

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Collective dynamics of periplasmic glutamine binding protein upon domain closure

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The role of dynamic conformational ensembles in biomolecular recognition

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Fast calculation of fluorescence correlation data with asynchronous time-correlated single-photon counting

1 reference

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Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection

1 reference

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28 May 2018

Dynamic personalities of proteins

1 reference

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28 May 2018

Intrinsic motions along an enzymatic reaction trajectory

1 reference

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Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism

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28 May 2018

Illuminating the mechanistic roles of enzyme conformational dynamics

1 reference

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28 May 2018

Single-molecule FRET with diffusion and conformational dynamics

1 reference

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28 May 2018

Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state

1 reference

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28 May 2018

Performance of fluorescence correlation spectroscopy for measuring diffusion and concentration

1 reference

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28 May 2018

Comparative molecular dynamics--similar folds and similar motions?

1 reference

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28 May 2018

Pulsed interleaved excitation

1 reference

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28 May 2018

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

1 reference

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28 May 2018

Theory of photon statistics in single-molecule Förster resonance energy transfer

1 reference

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Periplasmic binding proteins: a versatile superfamily for protein engineering

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1 reference

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Focal volume optics and experimental artifacts in confocal fluorescence correlation spectroscopy

1 reference

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28 May 2018

Synergistic effects of substrate-induced conformational changes in phosphoglycerate kinase activation

1 reference

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VMD: visual molecular dynamics

1 reference

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28 May 2018

Structure of the R65Q mutant of yeast 3-phosphoglycerate kinase complexed with Mg-AMP-PNP and 3-phospho-D-glycerate

1 reference

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28 May 2018

Structural mechanisms for domain movements in proteins

1 reference

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28 May 2018

Structure of Yeast Phosphoglycerate Kinase

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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16 August 2018

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16 August 2018

Detection of Structural Dynamics by FRET: A Photon Distribution and Fluorescence Lifetime Analysis of Systems with Multiple States

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Fluorescence properties of pteridine nucleoside analogs as monomers and incorporated into oligonucleotides

1 reference

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Conformational plasticity and dynamics in the generic protein folding catalyst SlyD unraveled by single-molecule FRET

1 reference

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12 December 2020

based on heuristic

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1 reference

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inferred from PubMed ID database lookup

Analysis of domain motions in large proteins

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the origin of broadening of single-molecule FRET efficiency distributions beyond shot noise limits

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational changes in yeast phosphoglycerate kinase upon substrate binding

1 reference

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12 December 2020

based on heuristic

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Accurate single-molecule FRET studies using multiparameter fluorescence detection

1 reference

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12 December 2020

based on heuristic

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Unfolded Protein and Peptide Dynamics Investigated with Single-Molecule FRET and Correlation Spectroscopy from Picoseconds to Seconds†

1 reference

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12 December 2020

based on heuristic

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An Experimental Comparison of the Maximum Likelihood Estimation and Nonlinear Least-Squares Fluorescence Lifetime Analysis of Single Molecules

1 reference

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based on heuristic

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Measuring conformational dynamics: a new FCS-FRET approach

1 reference

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.BPJ.2014.08.016

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23 February 2020

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Europe PubMed Central

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23 February 2020

PubMed publication ID

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Europe PubMed Central

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23 February 2020

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