(Q42552030)

2 November 2017

UMMS: constrained harmonic and anharmonic analyses of macromolecules based on elastic network models (English)

1 reference

2 November 2017

1 reference

Yunho Jang

1

1 reference

2 November 2017

Jay I Jeong

series ordinal

2

1 reference

2 November 2017

Moon K Kim

series ordinal

3

1 reference

2 November 2017

language of work or name

English

0 references

publication date

1 July 2006

1 reference

2 November 2017

Nucleic Acids Research

1 reference

2 November 2017

34

1 reference

2 November 2017

Web Server issue

1 reference

2 November 2017

W57-62

1 reference

A connection rule for alpha-carbon coarse-grained elastic network models using chemical bond information.

2 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Refinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

iGNM: a database of protein functional motions based on Gaussian Network Model.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Rigid-cluster models of conformational transitions in macromolecular machines and assemblies

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

WEBnm@: a web application for normal mode analyses of proteins

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

ProMode: a database of normal mode analyses on protein molecules with a full-atom model.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

An elastic network model of HK97 capsid maturation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Efficient generation of feasible pathways for protein conformational transitions

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Virus maturation involving large subunit rotations and local refolding

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Anisotropy of fluctuation dynamics of proteins with an elastic network model

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

28 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

A database of macromolecular motions

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

RASMOL: biomolecular graphics for all

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Maturation dynamics of bacteriophage HK97 capsid.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Global ribosome motions revealed with elastic network model.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

A Comparison Between Elastic Network Interpolation and MD Simulation of 16S Ribosomal RNA

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538792

Molecular dynamics of native protein. I. Computer simulation of trajectories

1 December 2018

1 reference

12 December 2020

Elastic models of conformational transitions in macromolecules

1 reference

12 December 2020

Molecular dynamics of native protein. II. Analysis and nature of motion

1 reference

12 December 2020

Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL039

1 reference

2 November 2017

journals/nar/JangJK06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 November 2017

1 reference